Re: [Bioc-devel] Unreproducible build check warning

2014-03-17 Thread Antti Honkela
Hi Valerie & Hervé, Thanks a lot, I will try adding the new alias! I am still baffled by the other half of the mystery, i.e. that the build check warning appeared to the reports about a week ago and I still cannot see it on my own R-3.1.0 alpha build. Any ideas why this would work differentl

Re: [Bioc-devel] Unreproducible build check warning

2014-03-17 Thread Hervé Pagès
Hi Antti, Yes it's a little bit surprising (and questionable) that 'R CMD check' requires you to define an alias that is inconsistent with: - Your setMethod statement: setMethod("[", signature(x="scoreList"), ... - The output of showMethods: showMethods("[") Function: [

Re: [Bioc-devel] Unreproducible build check warning

2014-03-17 Thread Valerie Obenchain
Hi Antti, It's looking for \alias{[,scoreList,ANY-method} The generic '[' can dispatch on arguments 'x', 'i' and 'j'. getGeneric("[") standardGeneric for "[" defined from package "base" function (x, i, j, ..., drop = TRUE) standardGeneric("[", .Primitive("[")) Methods may be defined for