On 05/01/2017 01:37, Martin Morgan wrote:
On 12/29/2016 12:25 PM, Vincent Carey wrote:
A while ago Martin and I discussed the possibility of idempotence for
TabixFile ... this seemed
to make sense and so
TabixFile
function (file, index = paste(file, "tbi", sep = "."), ..., yieldSize =
NA_int
On 12/29/2016 12:25 PM, Vincent Carey wrote:
A while ago Martin and I discussed the possibility of idempotence for
TabixFile ... this seemed
to make sense and so
TabixFile
function (file, index = paste(file, "tbi", sep = "."), ..., yieldSize =
NA_integer_)
{
if (is(file, "TabixFile"))
A while ago Martin and I discussed the possibility of idempotence for
TabixFile ... this seemed
to make sense and so
> TabixFile
function (file, index = paste(file, "tbi", sep = "."), ..., yieldSize =
NA_integer_)
{
if (is(file, "TabixFile"))
return(file)
tryCatch({
.
hi Lori,
thanks for the clarification. if this is an intended change then i'd say
the documentation needs to be updated since, as i showed in my email
below, it currently says that for functions such as 'TabixFileList()'
the input 'file' argument should be a 'TabixFile' instance and not a
char
Thank you for bringing this to our attention. There were some updates made a
few weeks ago to the behavior and input of 'TabixFileList()' . Its current
implementation will work with a character vector as input. I will investigate
further into why this change was made and if it needs to be addr
