Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37

2015-07-02 Thread Hervé Pagès
__ De : Hervé Pagès [hpa...@fredhutch.org] Date d'envoi : mercredi 1 juillet 2015 20:25 À : COMMO Frederic; bioc-devel@r-project.org Objet : Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37 Salut Frédéric, I had this on my list for a long time so here it goes

Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37

2015-07-02 Thread COMMO Frederic
e d'envoi : mercredi 1 juillet 2015 20:25 À : COMMO Frederic; bioc-devel@r-project.org Objet : Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37 Salut Frédéric, I had this on my list for a long time so here it goes. Starting with BSgenome 1.36.2 (in release) and 1.37.3 (in devel), a new

Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37

2015-07-01 Thread Hervé Pagès
Salut Frédéric, I had this on my list for a long time so here it goes. Starting with BSgenome 1.36.2 (in release) and 1.37.3 (in devel), a new API is available for querying a SNPlocs object: snpsBySeqname() snpsByOverlaps() snpsById() Note that this is the new recommended API. In partic

Re: [Bioc-devel] SNPlocs.Hsapiens.dbSNP142.GRCh37

2015-06-29 Thread COMMO Frederic
Erratum: the rsiIds come from Affymetrix-SNP6.0, not cytoScanHD. Frederic Commo Bioinformatics, U981 Gustave Roussy De : Bioc-devel [bioc-devel-boun...@r-project.org] de la part de COMMO Frederic [frederic.co...@gustaveroussy.fr] Date d'envoi : lundi 29 j