Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-09 Thread Nitesh Turaga
gards, Alan. From: Mike Smith Sent: 09 March 2021 11:14 To: Murphy, Alan E Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning I've used something like this approach i

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-09 Thread Murphy, Alan E
n E mailto:a.mur...@imperial.ac.uk>>; bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning This email from mangiolastef...@gmail.com<mailto:mangiol

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-09 Thread Mike Smith
Kind regards, > Alan. > > From: stefano > Sent: 08 March 2021 22:18 > To: Nitesh Turaga > Cc: Murphy, Alan E ; bioc-devel@r-project.org < > bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] Removal of large items in git history

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-09 Thread Murphy, Alan E
t; how would I go about checking (and removing?) hidden files from the .git/objects/pack history? Kind regards, Alan. From: stefano Sent: 08 March 2021 22:18 To: Nitesh Turaga Cc: Murphy, Alan E ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Removal of

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-08 Thread stefano
Hello, you can use bfg-repo-cleaner , have a read to this document, in the section "eliminate big files from repo" https://docs.google.com/document/d/1jxg7KCMQq3kiCcvodQk9JgtU51LqczOwLit1gHiTP4Q/edit?usp=sharing Best wishes. *Stefano * Stefano Mangiola | Postdoctoral fellow Papenfuss Lab

Re: [Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-08 Thread Nitesh Turaga
Hi Alan, Did you manage to solve this? There seems to be objects in your git repo which are bigger than the size which is required by Bioconductor for a software package. Please check hidden files as well. One test you can do is, to clone your package from github and see how much MB are dow