Hello,
Thanks a lot for your help. I removed the example, and also added an additional
check to not proceed if there is a failure to extract data from entrez_search
function. It passes my local checks and travis check. I am facing issues to
update the data to Bioconductor as I am having issues
Perhaps this helps explain things?
> z <- entrez_search("gtr","muscle_weakness", retmax = )$id
> any(z %in% keys(org.Hs.eg.db))
[1] FALSE
> zz <- entrez_summary("gene", z)
> table(do.call(c,sapply(extract_from_esummary(zz, "organism"),
> function(x) x$scientificname)))
A
Perhaps this helps explain things?
> z <- entrez_search("gtr","muscle_weakness", retmax = )$id
> any(z %in% keys(org.Hs.eg.db))
[1] FALSE
> zz <- entrez_summary("gene", z)
> table(do.call(c,sapply(extract_from_esummary(zz, "organism"),
> function(x) x$scientificname)))
A
