r-project.org; Shepherd, Lori
Subject: Re: [Bioc-devel] RareVariantVis failed
Ok, I pushed to upstream master. Where could I check that version "to be
checked" was updated to 2.7.1?
--
Tomasz
On Tue, 17 Apr 2018 17:35:18 +0200, Shepherd, Lori
wrote:
Yes that is correct.
Lori Shepherd
oc-devel@r-project.org; Shepherd, Lori
Subject: Re: [Bioc-devel] RareVariantVis failed
Output of git remote -v seems to be ok:
Tomaszs-MacBook-Pro:RareVariantVis tomaszstokowy$ git remote -v
origin https://github.com/tstokowy/RareVariantVis.git (fetch)
origin https://github.com/
Tuesday, April 17, 2018 11:20:33 AM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] RareVariantVis failed
Dear Bioc-devel,
I updated my package to version 2.7.1 following instructions from Robert
(https://github.com/tstokowy/RareVariantVis).
Unfortunately, check still reports error on versi
artment of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Tomasz Stokowy
Sent: Tuesday, April 17, 2018 11:30:17 AM
To: bioc-devel@r-project.org; Shepherd, Lori
Subject: Re: [Bioc-devel] RareVariantVis failed
Output of git remote -v seems to be ok
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Tomasz
Stokowy
Sent: Tuesday, April 17, 2018 11:20:33 AM
To: bioc-devel@r-project.org
Subject: Re: [Bi
Dear Bioc-devel,
I updated my package to version 2.7.1 following instructions from Robert
(https://github.com/tstokowy/RareVariantVis).
Unfortunately, check still reports error on version 2.7.0
https://master.bioconductor.org/checkResults/3.7/bioc-LATEST/RareVariantVis/malbec2-checksrc.html
Wha
Dear Robert,
Thank you for clarification. I updated package following your instructions
and committed changes to
https://github.com/tstokowy/RareVariantVis.
I will verify if the R CMD check goes through this time.
Kind regards,
--
Tomasz
On Tue, 03 Apr 2018 15:16:55 +0200, Robert Castelo
hi Tomasz,
regarding the warning caused by GenomicScores:
> Warning in scores(phastCons100way.UCSC.hg19, scores.only = TRUE,
> GRanges(seqnames = paste0("chr", :
>The 'scores()' method has been deprecated and will become defunct in
> the next release version of Biocondcutor 3.8. Please use
