Re: [Bioc-devel] RE : AnnotationDbi and select function

2014-03-12 Thread Marc Carlson
Also, There is nothing wrong with using GENEID the way that you initially did. It was just a small bug that prevented some internal subsetting from working properly and that is now fixed. It just happened that GENEID was equivalent to ENTREZID in this case. And that ends up making it a slo

Re: [Bioc-devel] RE : AnnotationDbi and select function

2014-03-12 Thread Marc Carlson
I just checked a fix in for this bug to GenomicFeatures (which happens to be where the problem was). It should percolate out to the build system soon. Marc On 03/12/2014 02:19 PM, Servant Nicolas wrote: Hi guys, Thanks for your feedbacks. Indeed I put GENEID because it is used in the txdb