Re: [Bioc-devel] R CMD CHECK warning -

2021-04-27 Thread Vincent Carey
I'd suggest that this topic be dealt with on the associated contribution issue. Please report sessionInfo() when discussing warnings. I will now make some comments on the contribution issue as I am trying to follow up your concerns. Thanks On Tue, Apr 27, 2021 at 3:07 AM alan murphy wrote:

Re: [Bioc-devel] R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic

2019-04-28 Thread Leif Wigge
Dear Benjamin, Thanks for the pointers! I adopted your solution and it now passes the check on tokay2 as well! Thanks! All the best Leif On 2019-04-26, 15:51, "Benjamin Tremblay" wrote: Hi, I’ve actually had the exact same problem. The solution for me was to change \link[pkg:f

Re: [Bioc-devel] R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic

2019-04-26 Thread Benjamin Tremblay
Hi, I’ve actually had the exact same problem. The solution for me was to change \link[pkg:foo]{bar} where foo is the actual .Rd filename in the original package. Downloading the limma source reveals there is an Rd file named 01Introduction.Rd, without the dot as you had it. So it would look lik

Re: [Bioc-devel] R CMD check warning from checking for future file timestamps

2019-03-08 Thread Shepherd, Lori
Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Kostka, Dennis Sent: Friday, March 8, 2019 11:41:43 AM To: bioc-devel@r-project.org Subject: Re: [Bioc-devel] R CMD check warn

Re: [Bioc-devel] R CMD check warning from checking for future file timestamps

2019-03-08 Thread Kostka, Dennis
Hi, Replying to this subject from two days ago, we have the same problem. The scds package we submitted passes no errors & no warnings except the following: * checking for future file timestamps ...Warning in file(con, "r") : cannot open URL 'http://worldclockapi.com/api/json/utc/now': HTTP st

Re: [Bioc-devel] R CMD check warning from checking for future file timestamps

2019-03-07 Thread Shepherd, Lori
Could you please provide more detail it does not appear that your message body came through? Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: