Re: [Bioc-devel] Question about a package submission

2016-10-28 Thread Martin Morgan
: Vincent Carey mailto:st...@channing.harvard.edu>>, Ioannis Vardaxis mailto:ioannis.varda...@math.ntnu.no>>, "bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>" mailto:bioc-devel@r-project.org>> Subject: Re: [Bi

Re: [Bioc-devel] Question about a package submission

2016-10-28 Thread Kevin RUE
tracklayer", "S4Vectors", "XVector", >>> "IRanges", >>>"Biostrings", "GenomicRanges", "GenomicAlignments")) >>> Worked and solved the error. >>> >>> Ioannis >>> -- >>&g

Re: [Bioc-devel] Question about a package submission

2016-10-28 Thread Kevin RUE
he error. >> >> Ioannis >> -- >> Ioannis Vardaxis >> Stipendiat IMF >> NTNU >> >> From: Kevin RUE >> Date: Friday 28 October 2016 at 12:38 >> To: Martin Morgan >> Cc: Vincent Carey , Ioannis Vardaxis < >> ioannis.varda...@

Re: [Bioc-devel] Question about a package submission

2016-10-28 Thread Kevin RUE
gt; Ioannis Vardaxis > Stipendiat IMF > NTNU > > From: Kevin RUE > Date: Friday 28 October 2016 at 12:38 > To: Martin Morgan > Cc: Vincent Carey , Ioannis Vardaxis < > ioannis.varda...@math.ntnu.no>, "bioc-devel@r-project.org" < > bioc-devel@r-projec

Re: [Bioc-devel] Question about a package submission

2016-10-28 Thread Ioannis Vardaxis
t.org<mailto:bioc-devel@r-project.org>" mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] Question about a package submission Dear Martin, Sorry for slightly diverting the thread solely based on the error message: Error in .Primitive("c")(, ) : could not find s

Re: [Bioc-devel] Question about a package submission

2016-10-28 Thread Kevin RUE
Dear Martin, Sorry for slightly diverting the thread solely based on the error message: > Error in .Primitive("c")(, "Rle">) : > could not find symbol "recursive" in environment of the generic function > I can somewhat picture the issue from your explanation. > I think that the generic was r

Re: [Bioc-devel] Question about a package submission

2016-10-27 Thread Martin Morgan
On 10/27/2016 08:22 AM, Kevin RUE wrote: Hi Ioannis, Vincent, I'm in the middle of debugging a similar situation myself, which may provide a reproducible example at a package level. I am in the process of setting up AppVeyor CI for my package, and my R CMD check fails because of the same error.

Re: [Bioc-devel] Question about a package submission

2016-10-27 Thread Kevin RUE
Hi Ioannis, Vincent, I'm in the middle of debugging a similar situation myself, which may provide a reproducible example at a package level. I am in the process of setting up AppVeyor CI for my package, and my R CMD check fails because of the same error. https://ci.appveyor.com/project/kevinrue/t

Re: [Bioc-devel] Question about a package submission

2016-10-27 Thread Vincent Carey
Please send a reproducible example with value of sessionInfo() at time of error. On Thu, Oct 27, 2016 at 7:06 AM, Ioannis Vardaxis < ioannis.varda...@math.ntnu.no> wrote: > Hi, > > I am using the R-devel version for writing an R package. I tried to use > the c(Granges,Granges) command to merge tw

Re: [Bioc-devel] Question about a package submission

2016-10-27 Thread Ioannis Vardaxis
Hi, I am using the R-devel version for writing an R package. I tried to use the c(Granges,Granges) command to merge two Granges objects and I get the following error: Error in .Primitive("c")(, ) : could not find symbol "recursive" in environment of the generic function I also get the same e