Re: [Bioc-devel] OrganismDb and associated TxDb

2015-02-16 Thread Hahne, Florian
Hi Vince, I haven't looked too much at the OrganismDb stuff yet. Just let me know when you run into any major roadblocks for a Gviz patch. We could refactor some things to make it work. FLorian On 13/02/15 19:01, "Vincent Carey" wrote: >Gviz has a nice way of working with TxDb instances to deriv

Re: [Bioc-devel] OrganismDb and associated TxDb

2015-02-13 Thread Marc Carlson
Hi Vince, First of all thank you for using OrganismDb objects. You raise some interesting points though about keeping these APIs better synchronized that I feel point to some deficiencies in the current design. I spoke with Herve about this and we are puzzling over possibly using inheritanc