Ah. That's the problem. The script in getdb.sh has
R --slave <
/home/ubuntu/cpb_anno/AnnotationBuildPipeline/annosrc/uniprot/script/
uniprot.ws/inst/script/processDataForBuild.R
which is a modification of what is in svn (to match the directory structure
of the AMI), which calls on a script in a l
You need to scroll down that script a ways... Look for 'yeast'.
On Mon, Oct 5, 2015 at 6:11 AM, James W. MacDonald wrote:
> Hi Marc,
>
> That script has this in it:
>
> ## For now just get data for the ones that we have traditionally supported
> ## I don't even know if the other species are ava
Hi Marc,
That script has this in it:
## For now just get data for the ones that we have traditionally supported
## I don't even know if the other species are available...
speciesList = c("chipsrc_human.sqlite",
"chipsrc_rat.sqlite",
"chipsrc_chicken.sqlite",
"chipsrc_zebrafish.sqlite",
#
Hi Jim,
You asked me on Friday where the PFAM Ids for yeast came from and I
couldn't recall because at the moment I was at Seattle Childrens (and thus
nowhere near my copy of my source code). But I also said I would look into
it for you later (and I have). Here is what my code tells me: So ever
