package, it successfully runs all the examples in the
vignette without error.
From: Fan, Jean
Sent: April 24, 2020 12:51 PM
To: Kieran O'Neill
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Help with setting up a build environment to match
Hi Kieran,
?Thanks Stephanie, that's also a very helpful suggestion! I hadn't thought of
using Docker containers.
From: Stephanie Gogarten
Sent: April 24, 2020 4:34 PM
To: Kieran O'Neill
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Help with set
__
From: Andris Jankevics
Sent: April 24, 2020 2:01 PM
To: Kieran O'Neill
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Help with setting up a build environment to match
Hi,
Are you using R 4.00 on Ubuntu?
Travis error indicates that you are using class(), output of this command
I have found the BIocnductor docker images very helpful in reproducing the
build environment:
https://www.bioconductor.org/help/docker/
I used a combination of the examples under "modifying the images" to get a
version of the docker images that would build my vignettes, and also
install all depend
Hi,
Are you using R 4.00 on Ubuntu?
Travis error indicates that you are using class(), output of this command has
changed.
https://www.bioconductor.org/developers/how-to/troubleshoot-build-report/#classEq
BW,
Andris
On 24 Apr 2020 20:40, kone...@bcgsc.ca wrote:
A package I maintain, contiBAI
Hi Kieran,
It looks like your Travis build is failing because of your vignettes:
Error: processing vignette 'contiBAIT.Rnw' failed with diagnostics:
6542 chunk 13 (label = orderAllLinkageGroupsExampleb)
6543Error in if (spearmanCor < 0) { : missing value where TRUE/FALSE needed
6544
6545
The
