Re: [Bioc-devel] Handling larger data in vignette

2018-07-30 Thread Levi Waldron
There are also weekly "long test" builds with a 6h timeout: https://stat.ethz.ch/pipermail/bioc-devel/2017-November/012326.html [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo

Re: [Bioc-devel] Handling larger data in vignette

2018-07-29 Thread Sarah Williams via Bioc-devel
Thanks Martin, I'll give the ExperimentHub package method a try then, if I can use it for vignette-only processed data. I think I was getting confused with annotationHub (which I gather is intended for useful-for-other-packages-or-applications raw data). Time should be ok - I just want to skip the

Re: [Bioc-devel] Handling larger data in vignette

2018-07-27 Thread Martin Morgan
Remember also that there are overall evaluation time limits. One strategy might use existing stable publicly available SC data sets from e.g., http://imlspenticton.uzh.ch:3838/conquer/ https://hemberg-lab.github.io/scRNA.seq.datasets/ These could be downloaded using BiocFileCache as a fir