Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread Martin Morgan
On 08/22/2017 04:33 PM, Andrzej Oleś wrote: Hi Martin, Nitesh, thanks for recreating the EBImage repo! I've noticed that even though the operation helped to fix one commit where the user was previously unknown: commit b67438e41b9b7dc62db8c403ee8afd673bd5c0a0 Author: unknown mailto:

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread Andrzej Oleś
Hi Martin, Nitesh, thanks for recreating the EBImage repo! I've noticed that even though the operation helped to fix one commit where the user was previously unknown: commit b67438e41b9b7dc62db8c403ee8afd673bd5c0a0 Author: unknown Date: Fri Apr 21 13:47:14 2006 + JWM:Added

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread James W. MacDonald
Never mind. It's all Patrick Aboyoun, for whom I think this should persist. Jim On Tue, Aug 22, 2017 at 4:13 PM, James W. MacDonald wrote: > Hi Martin and Nitesh, > > > On Tue, Aug 22, 2017 at 10:09 AM, Martin Morgan < > martin.mor...@roswellpark.org> wrote: > >> Thanks for your patience. We up

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread James W. MacDonald
Hi Martin and Nitesh, On Tue, Aug 22, 2017 at 10:09 AM, Martin Morgan < martin.mor...@roswellpark.org> wrote: > Thanks for your patience. We updated the repositories below; if you cloned > one of these repositories, you will need to DELETE your clone, and create a > new clone. If you have added

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread Martin Morgan
On 08/22/2017 09:24 AM, Andrzej Oleś wrote: Hi Martin, I've just noticed that EBImage, which is on the list of packages not to be regenerated, is actually affected too (according to the output below). Therefore, I would like to ask to have it regenerated for the sake of clean commit history.

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread Martin Morgan
Thanks for your patience. We updated the repositories below; if you cloned one of these repositories, you will need to DELETE your clone, and create a new clone. If you have added a remote and pulled from these repositories, you will need to redo the sync. See https://bioconductor.org/developer

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-22 Thread Andrzej Oleś
Hi Martin, I've just noticed that EBImage, which is on the list of packages not to be regenerated, is actually affected too (according to the output below). Therefore, I would like to ask to have it regenerated for the sake of clean commit history. Thanks, Andrzej [oles@localhost EBImage]$ git l

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-21 Thread Martin Morgan
On 08/21/2017 05:30 PM, Stephanie M. Gogarten wrote: I was actually thinking of SeqVarTools, since I have local commits that I'm not ready to push yet. GENESIS and GWASdata could be put on the "do not regenerate" list also - they have no unknown users, and I'd rather not go through all the step

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-21 Thread Stephanie M. Gogarten
I was actually thinking of SeqVarTools, since I have local commits that I'm not ready to push yet. GENESIS and GWASdata could be put on the "do not regenerate" list also - they have no unknown users, and I'd rather not go through all the steps again if I don't have to. thanks, Stephanie On 8/

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-21 Thread Lorena Pantano
Hi Martin, Can you check DEGreport? I have made commits already but is not in your list. I am off the office, so cannot check anything until tomorrow. Thanks sent not from my computer > On Aug 21, 2017, at 16:23, Martin Morgan > wrote: > >> On 08/21/2017 03:17 PM, Stephanie M. Gogarten wrot

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-21 Thread Martin Morgan
On 08/21/2017 03:17 PM, Stephanie M. Gogarten wrote: If we followed the steps here: https://www.bioconductor.org/developers/how-to/git/maintain-github-bioc/ How much, if any, of this will need to be redone after the repositories are regenerated? In particular, if I don't have an unknown user, w

Re: [Bioc-devel] Git transition -- regenerating repositories from svn

2017-08-21 Thread Stephanie M. Gogarten
If we followed the steps here: https://www.bioconductor.org/developers/how-to/git/maintain-github-bioc/ How much, if any, of this will need to be redone after the repositories are regenerated? In particular, if I don't have an unknown user, will the regenerated commits be equal to the previous