hi again,
thanks for your patience, the problem below has been fixed in GSVA
release and development versions 1.10.2 and 1.11.3, respectively. You
can specifically update GSVA from R with the following two instructions:
library(BiocInstaller)
update.packages(oldPkgs="GSVA", repos=biocinstallR
Hi Markus,
we did not test GSVA with LumiBatch objects before and that's the reason
we did not encounter this problem. I've taken a brief look to the
definition of the LumiBatch class of objects and my understanding of it
is that it contains the ExpressionSet class, and therefore, all methods
