Re: [Bioc-devel] DeMixT issue

2020-02-05 Thread Shepherd, Lori
Wait 24 hours and check the build report http://bioconductor.org/checkResults/ The updated versions will not show up in today's build report as they were pushed to git too late but should appear in tomorrow's build report. Any changes before 4:45 PM EST will not be included in the nightly build

Re: [Bioc-devel] DeMixT issue

2020-01-24 Thread Martin Morgan
s > > Buffalo, New York 14263 > > > From: Bioc-devel on behalf of > Shepherd, Lori > Sent: Tuesday, January 21, 2020 9:06 AM > To: py11 ; Martin Morgan > Cc: bioc-devel@r-project.org > Subject:

Re: [Bioc-devel] DeMixT issue

2020-01-23 Thread py11
on behalf of Shepherd, Lori Sent: Tuesday, January 21, 2020 9:06 AM To: py11 ; Martin Morgan Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] DeMixT issue The current version on devel is 1.3.2 which is what is consistent with what is in g...@git.bioconductor.org:packages/DeMixT.git If

Re: [Bioc-devel] DeMixT issue

2020-01-21 Thread Shepherd, Lori
Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Shepherd, Lori Sent: Tuesday, January 21, 2020 9:06 AM To: py11 ; Martin Morgan Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] DeMixT issue The current version on devel is 1.3

Re: [Bioc-devel] DeMixT issue

2020-01-21 Thread Shepherd, Lori
Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of py11 Sent: Monday, January 20, 2020 3:11 PM To: Martin Morgan Cc: bioc-devel@r-project.org Subject: Re: [Bi

Re: [Bioc-devel] DeMixT issue

2020-01-20 Thread py11
Hello, I pushed my updated package into biconductor master branch on Jan 18th; however, I still didn't see the version change in devel branch as follow: https://bioconductor.org/packages/devel/bioc/html/DeMixT.html May I ask where can I find the build report for the latest update? Thanks,

Re: [Bioc-devel] DeMixT issue

2020-01-18 Thread py11
Hi Martin, Thank you very much for the detailed report. I have noticed in the report https://bioconductor.org/checkResults/devel/bioc-LATEST/DeMixT/ the build failed due to check out of time. I re-arrange the examples in my Rd file, which guarantee the run time of R CMD check lower than 10

Re: [Bioc-devel] DeMixT issue

2020-01-15 Thread py11
Hi Nitesh, Thank you very much for detailed explanation. Since there is a major change in our package, we decided to bump version from 1.3.1 to 1.5.0 under devel branch. I did push repository from local machine into bioconductor from 1.3.1 --> 1.4.0 and the second try was from 1.3.1 --> 1

Re: [Bioc-devel] DeMixT issue

2020-01-15 Thread Turaga, Nitesh
Hi Peng, I was looking through your version bumps, and it looks a little off-track I have to say. The version bumps you should have in your repository should be following the order(from the commit below) should be 1.3.0 --> 1.3.1 --> 1.3.2 and so on. commit c358f5e7d8564423fb60abea7024b0106804