Re: [Bioc-devel] Coverage test badge not updating

2016-11-22 Thread Obenchain, Valerie
Thanks Leo. This should be fixed now - the url format needed to be updated. Valerie On 11/18/2016 08:17 AM, Leonardo Collado Torres wrote: > Hi Valerie, > > Thanks! I do see the badges now but the percent reported seems off. > Particularly: > > * http://bioconductor.org/packages/release/bioc/htm

Re: [Bioc-devel] Coverage test badge not updating

2016-11-18 Thread Leonardo Collado Torres
Hi Valerie, Thanks! I do see the badges now but the percent reported seems off. Particularly: * http://bioconductor.org/packages/release/bioc/html/recount.html shows a 65% badge with a link to https://codecov.io/github/Bioconductor-mirror/recount?branch=release-3.4 which has a 97% coverage * http

Re: [Bioc-devel] Coverage test badge not updating

2016-11-18 Thread Obenchain, Valerie
Coverage is now up and running for the release packages. I think all looks well... let me know if you see any problems. Valerie On 11/01/2016 03:14 PM, Hervé Pagès wrote: > Hi Leo, > > I can confirm that while Bioc 3.4 was in devel, package coverage was > computed only for the devel version of p

Re: [Bioc-devel] Coverage test badge not updating

2016-11-01 Thread Hervé Pagès
Hi Leo, I can confirm that while Bioc 3.4 was in devel, package coverage was computed only for the devel version of packages. When we released BioC 3.4, I moved the compute_coverage script that used to run on zin1 (which used to be the central build node for BioC 3.4 for months) to malbec2, which

Re: [Bioc-devel] Coverage test badge not updating

2016-11-01 Thread Leonardo Collado Torres
Hi, I know that there are several old threads about the coverage badges including this thread. Basically, while Bioc 3.4 was in devel, the coverage badges didn't work for Bioc release (3.3). However, now that 3.4 has been released, the badges for Bioc-release (3.4) are still not working and they o

Re: [Bioc-devel] Coverage test badge not updating

2015-11-23 Thread Leonardo Collado Torres
Thank you for fixing this Jim! I noticed it working now on devel. However, I believe that is still not working for the release branch. Cheers, Leo On Fri, Nov 20, 2015 at 3:37 PM, Jim Hester wrote: > The coverage tests were inadvertently not running, but they are now > re-enabled. > > Please let

Re: [Bioc-devel] Coverage test badge not updating

2015-11-20 Thread Jim Hester
The coverage tests were inadvertently not running, but they are now re-enabled. Please let us know if you notice any other problems Jim On Tue, Nov 17, 2015 at 12:16 PM, Leonardo Collado Torres wrote: > Hi, > > In my packages I enabled testing (via testthat) a few weeks ago. I did > so as can