Thanks Val. Looks like BiocNeighbors is all green again in the latest build, so
that’s a relief.
One down, two to go - Windows CHECK failures seem to be the tokay2’s idea of
Christmas presents.
-A
> On 20 Dec 2018, at 19:52, Obenchain, Valerie
> wrote:
>
> The problem is that during the nig
The problem is that during the nightly builds, one of the Bioconductor
packages writes out a .R/Makevars.win in biocbuild's HOME during R CMD
build.
Yesterday I removed the .R/ directory before the builds started and, as
expected, today's NodeInfo on tokay2 and packages using the C++11 show
th
The devel build report hasn't posted yet but I took a look at the new
compiler flag output Herve implemented. The results show tokay2 is
indeed using
CXX11FLAGS: -O3 -march=native -mtune=native
This is inconsistent with what we have in the R/etc//Makeconf for
both architectures on both tokay1
From what I can see in scPipe, it looks to me like there’s difference in flags
for tokay1 and tokay2 (release and development).
http://bioconductor.org/checkResults/release/bioc-LATEST/scPipe/tokay1-buildbin.html
-O2 -Wall -mtune=generic
http://bioconductor.org/checkResults/devel/bioc-LATEST/scP
Thanks Val. I don�t think it�s a BiocNeighbors thing, as it doesn�t try to
customize the compilation flags or have its own Makevars. Moreover, the �-O3
-mtune=native -mtune=generic� flags seem to show up on all of my packages
containing C++11 code. Some cursory checks of other packages suggest t
Hi Aaron,
The only compilation flags that are different for tokay1 (release) and
tokay2 (devel) are C++14 flags. BiocNeighbors is not using C++14 but
C++11 so I think the changes we discussed previously actually don't
apply to your case.
All compilation flags we use are listed at the top of th
I would hope we do not distribute binaries compiled with
-march=native
That seems very wrong.
On Sun, Dec 16, 2018 at 1:56 AM Aaron Lun <
infinite.monkeys.with.keyboa...@gmail.com> wrote:
> Sometime between 6-18 November, BiocNeighbors’ BioC-devel builds began
> failing on Windows 64-bit, and
