Re: [Bioc-devel] Bioconductor time out in Windows while building vignettes

2021-06-11 Thread Hervé Pagès
I agree that we don't have a fully satisfying explanation of what's going on. I investigated a little further and found the following: 1) I can reproduce this problem on a package that contains a dummy vignette with the following 1-line code chunk: utils::browseURL("https://bioconductor.

Re: [Bioc-devel] Bioconductor time out in Windows while building vignettes

2021-06-11 Thread Nuno Agostinho
Hi Hervé, Many thanks for your help! I modified plotSplicingEvent() to run differently in non-interactive R sessions. Now, it correctly prints the output in the vignette without opening the browser! Still, I find it weird that this issue is only a problem since Bioconductor 3.13 and for Windows

Re: [Bioc-devel] Bioconductor time out in Windows while building vignettes

2021-06-10 Thread Hervé Pagès
Hi Nuno, When I go on riesling1 and run 'R CMD build' on psichomics, the evaluation of the CLI_tutorial.Rmd vignette gets stuck at the call to plotSplicingEvent(). This call fires up the browser to display the alternate splicing event and the evaluation of the vignette resumes only after I sh