Re: [Bioc-devel] BiocCheck and version requirement

2021-04-08 Thread Henrik Bengtsson
> I believe in the past we tried suggesting removing a R dependency >> > altogether but that R CMD check complained not having an R dependency? >> > Maybe someone remembers more about this. >> > >> > >> > >> > >> > Lori Shepherd >

Re: [Bioc-devel] BiocCheck and version requirement

2021-04-08 Thread Kasper Daniel Hansen
; > > > > Lori Shepherd > > > > Bioconductor Core Team > > > > Roswell Park Comprehensive Cancer Center > > > > Department of Biostatistics & Bioinformatics > > > > Elm & Carlton Streets > > > > Buffalo, New York 14263 > > > >

Re: [Bioc-devel] BiocCheck and version requirement

2021-04-08 Thread Henrik Bengtsson
ive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________ > From: Kasper Daniel Hansen > Sent: Thursday, April 8, 2021 1:33 PM > To: Kern, Lori > Cc: bioc-devel > S

Re: [Bioc-devel] BiocCheck and version requirement

2021-04-08 Thread Kern, Lori
ics Elm & Carlton Streets Buffalo, New York 14263 From: Kasper Daniel Hansen Sent: Thursday, April 8, 2021 1:33 PM To: Kern, Lori Cc: bioc-devel Subject: Re: [Bioc-devel] BiocCheck and version requirement But why is it even a warning? The submission polic

Re: [Bioc-devel] BiocCheck and version requirement

2021-04-08 Thread Kasper Daniel Hansen
But why is it even a warning? The submission policy is that warnings are discouraged. This means that developers will adapt to this warning. The check is also against the policies on the website which state you don't need a formal dependency. Best, Kasper On Thu, Apr 8, 2021 at 3:53 PM Kern, Lor

Re: [Bioc-devel] BiocCheck and version requirement

2021-04-08 Thread Kern, Lori
This requirement has been around for awhile. New package submissions are checked against the devel version of Bioconductor. At the moment this is R devel (R 4.1) and Bioconductor packages in devel for 3.13. Given that Bioconductor releases are closely tied to a R release, and changes in R can