Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

Dear Martin, > On 17 Apr 2015, at 14:00, Martin Morgan wrote: > > On 04/13/2015 02:48 AM, Thomas Maurel wrote: >> Dear Martin, >> >> I have investigated with our Web team and we believe that the command >> attempts to open a number of concurrent sessions in order to download all of >> the files

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

On 04/13/2015 02:48 AM, Thomas Maurel wrote: Dear Martin, I have investigated with our Web team and we believe that the command attempts to open a number of concurrent sessions in order to download all of the files. If that is the case then the problem is that our ftp server is configured to lim

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

Hi Johannes, I have updated the GRanges for all the GTF files. > library(AnnotationHub) > hubCache(ah) [1] "/home/sarora/.AnnotationHub" ## delete everything from this folder > ah = AnnotationHub() retrieving 1 resources |==|

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

Hi Johannes, We are already planning to upgrade those objects to have that information when they are downloaded... Sonali is actually working on that right now. She will probably have updated that information by the end of the week or so. It's a lot of files to update, but this is already i

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

Dear Martin, I have investigated with our Web team and we believe that the command attempts to open a number of concurrent sessions in order to download all of the files. If that is the case then the problem is that our ftp server is configured to limit the number of concurrent sessions per use

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

Hi Marc, you're right. I'll start with option 1. For that it would however be really nice to have the seqinfo available in the GRanges as mentioned in my previous mail. In the meantime I'll try to fetch the chrom lengths myself but would be nice to have all that ready in the GRanges at some poi

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

On 04/10/2015 12:18 PM, Rainer Johannes wrote: > dear Sonali, Herve, > > On 10 Apr 2015, at 19:59, Herv� Pag�s > mailto:hpa...@fredhutch.org>> wrote: > > Hi Johannes, Sonali, > > On 04/10/2015 09:40 AM, Arora, Sonali wrote: > Hi Rainer, > > Just to be clear - what do you want to be available from

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

On 04/10/2015 12:18 PM, Rainer Johannes wrote: dear Sonali, Herve, On 10 Apr 2015, at 19:59, Hervé Pagès mailto:hpa...@fredhutch.org>> wrote: Hi Johannes, Sonali, On 04/10/2015 09:40 AM, Arora, Sonali wrote: Hi Rainer, Just to be clear - what do you want to be available from AnnotationHub()

Re: [Bioc-devel] AnnotationHubData Error: Access denied: 530

Dear Johannes, I am going to update the GRanges object ( from Ensembl's GTF files) with the necessary information. Once that's done, I'll post back here. Thanks, Sonali. On 4/10/2015 12:18 PM, Rainer Johannes wrote: > dear Sonali, Herve, > >> On 10 Apr 2015, at 19:59, Herv� Pag�s >