Re: [Bioc-devel] Acceptable dataset origins besides ExperimentHub

2020-11-13 Thread Martin Morgan
Hi Hector -- caching means that the file is downloaded once per computer, so when, for instance, you edit your vignette and need to rebuild it, you don't have to re-download the data. I don't think your static vignette is suitable for Bioconductor -- it sounds like you are trying to provide a

Re: [Bioc-devel] Acceptable dataset origins besides ExperimentHub

2020-11-13 Thread Hector Gracia
Thanks Lori for your answer. I am not sure about the benefits of use BiocFileCache in this case, because data is only needed to run a more extensive tutorial based on large dataset. This dataset is not needed for the functionality of the package and is just a one time download. Besides that, i

Re: [Bioc-devel] Acceptable dataset origins besides ExperimentHub

2020-11-10 Thread Kern, Lori
nt of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Sean Davis Sent: Tuesday, November 10, 2020 7:29 AM To: Hector Gracia Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Acceptable da

Re: [Bioc-devel] Acceptable dataset origins besides ExperimentHub

2020-11-10 Thread Sean Davis
Hi, Hector. While an "unofficial" answer, there are many packages that access data from public repositories, so using an EBI-supported repository and FTP site seems perfectly acceptable to me. Sean ᐧ On Tue, Nov 10, 2020 at 5:54 AM Hector Gracia wrote: > Recently our package AlpsNMR was accep