Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Thanks, Martin! Oleksii On Fri, 25 Oct 2024 at 09:09, Martin Grigorov wrote: > Hi Oleksii, > > Actually "/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found" > was *the* reason to introduce conda (to install GNU compilers 14.x (gcc, > gxx together with libstdcxx)). > But then it appea

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Hi Oleksii, Actually "/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found" was *the* reason to introduce conda (to install GNU compilers 14.x (gcc, gxx together with libstdcxx)). But then it appeared that adding ~/miniforge3/lib to LD_LIBRARY_PATH breaks dnf/yum ... Now I reworked the wa

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Hi Martin, sorry to bother, but there's some other issue now, possibly related to conda as well. Could you please have a look? Best, Oleksii On Wed, 23 Oct 2024 at 11:14, Oleksii Nikolaienko < oleksii.ni

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Thanks very much! Oleksii On Wed, 23 Oct 2024 at 10:52, Martin Grigorov wrote: > Hi Oleksii, > > On Wed, Oct 23, 2024 at 9:47 AM Oleksii Nikolaienko < > oleksii.nikolaie...@gmail.com> wrote: > >> Hi Martin, >> could you please also install libz-dev or zlib1g-dev (not sure which one >> is needed

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Hi Oleksii, On Wed, Oct 23, 2024 at 9:47 AM Oleksii Nikolaienko < oleksii.nikolaie...@gmail.com> wrote: > Hi Martin, > could you please also install libz-dev or zlib1g-dev (not sure which one > is needed)? - > https://bioconductor.org/checkResults/devel/bioc-LATEST/epialleleR/kunpeng2-install.ht

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Hi Martin, could you please also install libz-dev or zlib1g-dev (not sure which one is needed)? - https://bioconductor.org/checkResults/devel/bioc-LATEST/epialleleR/kunpeng2-install.html Best, Oleksii On Wed, 23 Oct 2024 at 08:33, Martin Grigorov wrote: > Hi, > > The problem was missing rustc

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Hi, The problem was missing rustc and cargo on kunpeng2: = /bin/sh: line 2: rustc: command not found Rust version: /bin/sh: line 3: cargo: command not found Cargo version: /bin/sh: line 11: cargo: command not found make: *** [Makevars:25: /home/b

Re: [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform

Thank you for reaching out. The ERROR will not affect your package being released in 3.20. We will investigate why CVXR is not available on that platform. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinforma