On 04/03/2014 06:17 PM, Yuan Luo wrote:
A side question, in the frame 3, what does .local mean? local environment? like
if I go into frame 3, I'd be able to print out their values?
(I'm only the messenger) .local is a nested function created when a method adds
arguments to the generic. After
If you want to step into the environments where the errors are happening
you want options(error=recover) not traceback. In that case, you can step
into each of the frames.
The .local is actually the body of the method being called though, nothing
to do with an environment.
~G
On Thu, Apr 3, 20
A side question, in the frame 3, what does .local mean? local environment?
like if I go into frame 3, I'd be able to print out their values?
On Thu, Apr 3, 2014 at 9:10 PM, Yuan Luo wrote:
> I think that line at 4 points to the generic definition, at least on my
> machine (and keep source works
I think that line at 4 points to the generic definition, at least on my
machine (and keep source works, thanks!).
Just found what was the culprit, there is a wrapper in
findOverlaps-GIntervalTree-methods.R#12. After updating that, it works.
> traceback()
5: stop(gettextf("'arg' should be one of %s
On 04/03/2014 04:42 PM, Michael Lawrence wrote:
I'll look at the code. As far as tracking line numbers, no, because the
code is bundled into a package -- there are no files anymore. In principle,
that could be improved, but as far as I know, it hasn't been. If you're
I think there's an option,
I'll look at the code. As far as tracking line numbers, no, because the
code is bundled into a package -- there are no files anymore. In principle,
that could be improved, but as far as I know, it hasn't been. If you're
trying to figure out dispatch behavior, things like
selectMethod(findOverlaps,
At the moment I am using the package to tweak some design on interval tree
algorithm, and much of my efforts are hack. So does the code suggest to you
what I am doing wrong to get the match.arg failing error?
Also, when you were developing the package, how do you tell the traceback
to show line num
It looks like the only hits this will filter out are cases where the start
of the query (X) is equal to the end of the subject (Y), but it seems like
the "o" operation is different -- it requires that X start before Y starts
and end before Y ends.
We could add these relations to IRanges, but maybe
Hi Michael,
Thanks for your reply! I covered setGeneric as well, attached is the
modified code.
My change is pretty simple, I want to support the o relation in Allen's
Interval algebra (http://en.wikipedia.org/wiki/Allen's_interval_algebra)
So I added one more filter option
} else if (type == "
On Thu, Apr 3, 2014 at 11:33 AM, Yuan Luo wrote:
> Hi All,
> Sorry for possible spam, but I am trying to customize IRanges package
> locally. For what I am doing, I introduced another option to type
> parameters to the findOverlaps method. In the file findOverlaps-methods.R,
> I modified every in
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