Re: [Bioc-devel] Bioconductor data packages containing very large files

2023-01-05 Thread Vincent Carey
I would like us to discuss this in the context of the HDF Scalable Data Service that we have running on the NSF cloud in jetstream2. Let's discuss off line and then report back to the list. On Thu, Jan 5, 2023 at 7:11 AM Heery Richard wrote: > Thank you Lori. > > I was wondering if there is so

Re: [Bioc-devel] Bioconductor data packages containing very large files

2023-01-05 Thread Heery Richard
Thank you Lori. I was wondering if there is someone I could ask if what I am working on could be of interest and suitable for Bioconductor before investing more time developing it and uploading the data? What I have is a HDF5 file constructed using the Bioconductor methrix package for all of t

Re: [Bioc-devel] Bioconductor data packages containing very large files

2023-01-04 Thread Kern, Lori
A package cannot be that large directly. Please see information on creating an ExperimentHub package to provide the data for use in the package: https://bioconductor.org/packages/release/bioc/vignettes/HubPub/inst/doc/CreateAHubPackage.html Cheers, Lori Shepherd - Kern Bioconductor Core