Also FWIW changing things like (there are a number of these changes)
sum(unlist(lapply(data, length)))/1e+06
to
sum(lengths(data)) / 1e6
actually has measurable effect on the speed of your code.
Martin
On 04/18/2018 10:47 AM, Carmen M. Livi wrote:
Dear Martin Morgan,
ok, I will swit
Dear Martin Morgan,
ok, I will switch back to parallel then. Thank you very much for your reply.
Kind regards,
Carmen
On 18/04/2018 15:30, Martin Morgan wrote:
I'm sorry not to respond to your first email. This is a problem in
BiocParallel that I am working on. In your particular case, where y
I'm sorry not to respond to your first email. This is a problem in
BiocParallel that I am working on. In your particular case, where you
are relying on a third-party package that uses parallel::mclapply, I
think you should revert to using that.
Martin
On 04/18/2018 09:22 AM, Carmen M. Livi wr
