Re: [Bioc-devel] Unclear build failure ‘appending gaps’

2019-03-27 Thread Shepherd, Lori
Tuesday, March 26, 2019 4:08:15 PM To: Yue Zhao (Jason) Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Unclear build failure �appending gaps� Is there a standard system loadout I should be matching? Something must be different between my Windows build server and the bioconductor one. I

Re: [Bioc-devel] Unclear build failure ‘appending gaps’

2019-03-26 Thread Karl Stamm
Is there a standard system loadout I should be matching? Something must be different between my Windows build server and the bioconductor one. I need to reproduce the error in order to debug it, but everything is building fine locally. On Tue, Mar 26, 2019 at 12:21 PM Yue Zhao (Jason) wrote: > A

Re: [Bioc-devel] Unclear build failure ‘appending gaps’

2019-03-26 Thread Yue Zhao (Jason)
A new error showed up: logical subscript contains NAs *--* *Yue (Jason) Zhao* PhD Candidate, Bioinformatics Program Boston University yu...@bu.edu On Sat, Mar 23, 2019 at 11:22 AM Michael Lawrence via Bioc-devel < bioc-devel@r-project.org> wrote: > This is due to some buggy changes to the

Re: [Bioc-devel] Unclear build failure ‘appending gaps’

2019-03-26 Thread Karl Stamm
That first error has resolved, and I have new errors on the build on Windows and on OSX, while the Linux build goes fine. I have build and check and test on OSX and Windows on my end and everything works. There must be something different on the Bioc build servers I am not matching up with. The OS

Re: [Bioc-devel] Unclear build failure ‘appending gaps’

2019-03-23 Thread Michael Lawrence via Bioc-devel
This is due to some buggy changes to the internals of the S4Vectors package. I should be able to fix these today. On Sat, Mar 23, 2019 at 7:41 AM Karl Stamm wrote: > My package rgsepd has failed build recently. > > I don't understand the error message, and need some guidance. It says Error > bui