done anywhere. Every page I've read on
this topic strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] x
age
that relies on these variables for its configure/build process.
H.
On 04/20/2017 03:24 PM, Dan Tenenbaum wrote:
Disabling SIP should not be done anywhere. Every page I've read on
this topic strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: &
M, Dan Tenenbaum wrote:
Disabling SIP should not be done anywhere. Every page I've read on
this topic strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday,
've read on
this topic strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
m wrote:
Disabling SIP should not be done anywhere. Every page I've read on
this topic strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017
rages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 04/20/2017 03:01 PM, cstrato wrote:
c strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 04/20/2017 03:
ad on
this topic strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 04/20/2017 03:01 PM, cstrato wrote:
Dear Herve,
Doing 'csrutil disable' does indeed solve the problem, since:
1, in this way I was able to build xps on Mac OS Sierra
2,
quot;Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 04/20/2017 03:01 PM, cstrato wrote:
Dear Herve,
Doing 'csrutil disable' does
April 20, 2017 3:17:23 PM
> Subject: Re: [Bioc-devel] xps build problem on veracruz2
> On 04/20/2017 03:01 PM, cstrato wrote:
>> Dear Herve,
>>
>> Doing 'csrutil disable' does indeed solve the problem, since:
>>
>> 1, in this way I was able
. Every page I've read on this topic
strongly discourages doing this.
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "Dan Tenenbaum"
Cc: "bioc-devel"
Sent: Thursday, April 20, 2017 3:17:23 PM
Subject: Re: [Bioc-devel] xps build p
On 04/20/2017 03:01 PM, cstrato wrote:
Dear Herve,
Doing 'csrutil disable' does indeed solve the problem, since:
1, in this way I was able to build xps on Mac OS Sierra
2, in this way I could already help one user of xps, see:
https://urldefense.proofpoint.com/v2/url?u=https-3A__support.biocon
Dear Herve,
Doing 'csrutil disable' does indeed solve the problem, since:
1, in this way I was able to build xps on Mac OS Sierra
2, in this way I could already help one user of xps, see:
https://support.bioconductor.org/p/90056/#90247
This means, that users of xps seem to be willing to disabl
On 04/20/2017 10:59 AM, Hervé Pagès wrote:
Hi Christian,
Disabling 'csrutil disable' might help xps on veracruz2 but that
^^
oops, no double negative intended here. I meant, doing 'csrutil disable'
might help... etc
H.
won't help your end users.
I'm no expert in de
Hi Christian,
Disabling 'csrutil disable' might help xps on veracruz2 but that
won't help your end users.
I'm no expert in developing a package on Mac but other people on
this list are. Also R-SIG-Mac might be a good place to seek help
for this.
Cheers,
H.
On 04/20/2017 10:53 AM, cstrato wrot
Dear Herve,
Thank you for your efforts to try to install xps. I am glad to hear that
you could build ROOT 5 from source.
It's a pity that Apple does no longer allow the use of
DYLD_LIBRARY_PATH. This seems to break the code of a lot of people (when
googling around).
I will try to change th
.
But I understand that this is a decision the CRAN people have to
make.
You're welcome to discuss this choice on the R-SIG-Mac mailing list.
Cheers,
H.
Best regards,
Christian
On 03/24/17 01:10, Dan Tenenbaum wrote:
- Original Message -
From: "Hervé Pagès"
To
hoice on the R-SIG-Mac mailing list.
Cheers,
H.
Best regards,
Christian
On 03/24/17 01:10, Dan Tenenbaum wrote:
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xp
uot;Hervé Pagès"
To: "cstrato" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 03/23/2017 11:09 AM, cstrato wrote:
Dear Herve,
Thank you for your explanation.
The reason that xps does not work wi
To: "cstrato" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 03/23/2017 11:09 AM, cstrato wrote:
Dear Herve,
Thank you for your explanation.
The reason that xps does not work with ROOT 6 is that I have
tr
to" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 03/23/2017 11:09 AM, cstrato wrote:
Dear Herve,
Thank you for your explanation.
The reason that xps does not work with ROOT 6 is that I have tried it
but the
ers,
H.
Best regards,
Christian
On 03/24/17 01:10, Dan Tenenbaum wrote:
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 03
Cheers,
H.
Best regards,
Christian
On 03/24/17 01:10, Dan Tenenbaum wrote:
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
:
- Original Message -
From: "Hervé Pagès"
To: "cstrato" , "bioc-devel"
Sent: Thursday, March 23, 2017 12:14:38 PM
Subject: Re: [Bioc-devel] xps build problem on veracruz2
On 03/23/2017 11:09 AM, cstrato wrote:
Dear Herve,
Thank you for your explanation.
- Original Message -
> From: "Hervé Pagès"
> To: "cstrato" , "bioc-devel"
> Sent: Thursday, March 23, 2017 12:14:38 PM
> Subject: Re: [Bioc-devel] xps build problem on veracruz2
> On 03/23/2017 11:09 AM, cstrato wrote:
>> Dear Her
On 03/23/2017 11:09 AM, cstrato wrote:
Dear Herve,
Thank you for your explanation.
The reason that xps does not work with ROOT 6 is that I have tried it
but there seem to be so many changes, that I did not succeed.
Since for xps there is no advantage using ROOT 6 vs ROOT 5, and ROOT 5
was still
Dear Herve,
Thank you for your explanation.
The reason that xps does not work with ROOT 6 is that I have tried it
but there seem to be so many changes, that I did not succeed.
Since for xps there is no advantage using ROOT 6 vs ROOT 5, and ROOT 5
was still supported, I have decided to stay wit
Hi Christian,
The CRAN folks are currently experimenting with clang 4.0.0 for
producing the Mac binaries of R and CRAN packages so we are using
the same on veracruz2. This is a version of clang that is ahead of
what's in XCode 8.x or XCode 7.x. So I guess that means we'll have
to compile ROOT fro
Hi,
veracruz2 is in testing / setup stage and is not the official Mac devel
builder. See my post here:
https://stat.ethz.ch/pipermail/bioc-devel/2017-March/010629.html
Currently there are more pressing issues than the ROOT system
dependency. Rest assured that ROOT will be correctly installed o
Dear Valerie,
I have seen that you have set up a new Mac server, veracruz2, running El
Capitan.
Although the development version of xps does even run on Mac OS Sierra,
one issue still remains the same:
You need to install the latest ROOT version 5, since xps does not run
with ROOT 6!
So
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