Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-11 Thread Turaga, Nitesh
>> core.bare=false >>>>>> core.logallrefupdates=true >>>>>> remote.origin.url=https://github.com/gosianow/cytofWorkflow.git >>>>>> remote.origin.fetch=+refs/heads/*:refs/remotes/origin/* >>>>>> branch.master.remote=origin &g

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-11 Thread Malgorzata Nowicka
>>> remote.bioc.fetch=+refs/heads/*:refs/remotes/bioc/* >>>>> >>>>> >>>>>> On 8 Aug 2017, at 16:42, Turaga, Nitesh >>>>>> wrote: >>>>>> >>>>>> Hi Gosia, >>>>>> >&

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-10 Thread Turaga, Nitesh
Workflow >>>>> >>>>> $ git log >>>>> >>>>> $ bash update_remotes.sh >>>>> >>>>> $ git remote remove bioc >>>>> >>>>> $ git remote add bioc >>>>> https://hedgehog.fh

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-10 Thread Turaga, Nitesh
osianow/cytofWorkflow.git (push) >>>> >>>> $ git branch -a >>>> >>>> devel >>>> * master >>>> remotes/git-svn-devel >>>> remotes/origin/HEAD -> origin/master >>>> remotes/origin/master >>>> >>&g

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-10 Thread Malgorzata Nowicka
;>> Rebuilding >>> .git/svn/refs/remotes/git-svn-devel/.rev_map.bc3139a8-67e5-0310-9ffc-ced21a209358 >>> ... >>> r130219 = ac7399e64e2bc55497fd432e7731b231173eceba >>> Done rebuilding >>> .git/svn/refs/remotes/git-svn-devel/.rev_map.bc3139a8-67e

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-09 Thread Turaga, Nitesh
r that, make whatever changes you need >> to, and try the >> >> • `git merge master —log` to merge your changes from the master branch or >> skip this step and work directly on the current branch. >> >> to sync and commit your changes to svn. >> >> $ git svn dcommit --add-author-from >>

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-09 Thread Malgorzata Nowicka
is because this is a workflow package and not a >> software package. The workflow package location is >> >> >> /trunk/madman/workflows/ >> >> >> It should be updated there. >> >> >> >> Lori Shepherd >> >> Bioc

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-08 Thread Turaga, Nitesh
Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > > From: Bioc-devel on behalf of Malgorzata > Nowicka > Sent:

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-07-19 Thread Shepherd, Lori
& Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Malgorzata Nowicka Sent: Wednesday, July 19, 2017 9:46:33 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] unable to push local changes to bioconductor svn repository H

[Bioc-devel] unable to push local changes to bioconductor svn repository

2017-07-19 Thread Malgorzata Nowicka
Hello, I have followed Scenario number 2 for my svn mirror for the cytofWorkflow package (more precisely workflow) and I encounter the same problem as described below by Zongli. Below are my exact steps. The same steps worked for my other package DRIMSeq. Could it be because it is a workflow

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-05-12 Thread Martin Morgan
On 05/11/2017 10:02 AM, Xu, Zongli (NIH/NIEHS) [E] wrote: Hi, I got a new Linux computer, cloned my package from github, made some changes. I am able to update the changes to github, but can not push it to Bioconductor svn repository. Can someone help me to solve the problem. The following

[Bioc-devel] unable to push local changes to bioconductor svn repository

2017-05-11 Thread Xu, Zongli (NIH/NIEHS) [E]
Hi, I got a new Linux computer, cloned my package from github, made some changes. I am able to update the changes to github, but can not push it to Bioconductor svn repository. Can someone help me to solve the problem. The following is what I did: git svn clone https://github.com/xuz1/EN