Many thanks!
Best,
Simo
On 31.07.19 11:39 vorm., Pages, Herve wrote:
Hi Simo,
Glad you were able to switch from install-time to run-time compilation.
The C++14 compiler box for tokay1 shows that this compiler is not
available on this machine. What you see below the box under "Compiler
versio
Hi Simo,
Glad you were able to switch from install-time to run-time compilation.
The C++14 compiler box for tokay1 shows that this compiler is not
available on this machine. What you see below the box under "Compiler
version" is produced by some code that tries to detect the version
of the compil
Well, that's pretty clear. The compiler apparently doesn't support C++14
(perhaps ask about this on the Stan support - it suggests that Stan doesn't
run on Windows with default Rtools). When you delay compiling the models to
runtime, of course the package builds - it just won't work for any user.
Surprisingly, if I design the package such that the stan models are
compiled only at run-time I get no issues -> all servers build the
package correctly.
(https://github.com/Bioconductor/Contributions/issues/1187)
On the other hand, if I follow the rstan instructions on how to design
an R pack
My understanding - and I could be wrong - is that Stan compiles a model, so
the compiler needs to be available at run time and not just at build time.
On Thu, Jul 25, 2019 at 4:02 PM Simo Kitanovski
wrote:
> Thanks!
>
> I will try to revise the code to avoid CXX14 if this is that case.
>
> Best
Thanks!
I will try to revise the code to avoid CXX14 if this is that case.
Best
On 25.07.19 11:52 nachm., Martin Morgan wrote:
Windows (and macOS) CRAN packages are installed as binaries (as experienced by
the typical user), so don't need compilation-- Rstan is built by CRAN through
whateve
Windows (and macOS) CRAN packages are installed as binaries (as experienced by
the typical user), so don't need compilation-- Rstan is built by CRAN through
whatever magic / agreement.
The paragraph at the very end of
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Using-C_002b_
What's weird here is that you supposedly depend on rstan which also
requires a C++14. How can the build system have that package installed
without having a compliant compiler?
On Thu, Jul 25, 2019 at 12:05 PM Simo Kitanovski
wrote:
> Hello Bioconductor community,
>
> I maintain the Bioconductor
Hello Bioconductor community,
I maintain the Bioconductor package genphen which depends on rstan for
MCMC sampling. To build the package one needs a C++14 compiler.
I have no problem building the package on malbec1 and merida1, but not
on tokay1. Any idea of what might have gone wrong on this
