Re: [Bioc-devel] some new warnings in a package

2016-05-02 Thread Martin Morgan
On 05/02/2016 12:37 PM, Ludwig Geistlinger wrote: So yes, you should update the NAMESPACE file following the warning message you see in your build report. Hi Martin, I did not encounter such a note on importing from base packages ever before - but ok, I followed your suggestion and added the

Re: [Bioc-devel] some new warnings in a package

2016-05-02 Thread Ludwig Geistlinger
> So yes, you should update the NAMESPACE file following the warning > message you see in your build report. Hi Martin, I did not encounter such a note on importing from base packages ever before - but ok, I followed your suggestion and added the imports. However all remaining NOTEs and WARNINGs t

Re: [Bioc-devel] some new warnings in a package

2016-05-02 Thread Martin Morgan
On 05/02/2016 11:11 AM, Ludwig Geistlinger wrote: I encounter the same issue with EnrichmentBrowser - and apparently, several other packages too, e.g. ensembldb, erma, ExiMiR ... The warnings seem to be, at first glance, linked to messages e.g. for masking: ---

Re: [Bioc-devel] some new warnings in a package

2016-05-02 Thread Ludwig Geistlinger
I encounter the same issue with EnrichmentBrowser - and apparently, several other packages too, e.g. ensembldb, erma, ExiMiR ... The warnings seem to be, at first glance, linked to messages e.g. for masking: --- * checking S3 ge

Re: [Bioc-devel] some new warnings in a package

2016-04-29 Thread Ramon Diaz-Uriarte
On Fri, 29-04-2016, at 23:49, Martin Morgan wrote: > On 04/29/2016 05:23 PM, Ramon Diaz-Uriarte wrote: >> Dear All, >> >> In case it matters, and since we are past the 22, I just noticed that a >> package I maintain (ADaCGH2) is giving warnings in Linux and Mac (e.g., >> https://www.bioconduct

Re: [Bioc-devel] some new warnings in a package

2016-04-29 Thread Martin Morgan
On 04/29/2016 05:23 PM, Ramon Diaz-Uriarte wrote: Dear All, In case it matters, and since we are past the 22, I just noticed that a package I maintain (ADaCGH2) is giving warnings in Linux and Mac (e.g., https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ADaCGH2/zin2-checksrc.html) th

[Bioc-devel] some new warnings in a package

2016-04-29 Thread Ramon Diaz-Uriarte
Dear All, In case it matters, and since we are past the 22, I just noticed that a package I maintain (ADaCGH2) is giving warnings in Linux and Mac (e.g., https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ADaCGH2/zin2-checksrc.html) that, if I recall correctly, were not being given around