Re: [Bioc-devel] small request on graph::graphBAM()

2013-02-19 Thread Robert Castelo
hi Valerie, thanks a lot for implementing this!! regarding addNode() i have no specific request or opinion about it. best regards, robert. On 2/19/13 9:44 PM, Valerie Obenchain wrote: This change is now implemented in devel 1.37.6. > nms <- paste0("Y", 8:11) > df <- data.frame(from=nms, to

Re: [Bioc-devel] small request on graph::graphBAM()

2013-02-19 Thread Valerie Obenchain
This change is now implemented in devel 1.37.6. > nms <- paste0("Y", 8:11) > df <- data.frame(from=nms, to=nms, weight=rep(1, 4)) Node names are not sorted when full vector of names is provided: > nodes(graphBAM(df, nodes=c(nms, "foo"))) [1] "Y8" "Y9" "Y10" "Y11" "foo" Names are sorted when o

Re: [Bioc-devel] small request on graph::graphBAM()

2013-02-07 Thread Robert Castelo
Great, thanks! robert. On 02/07/2013 05:44 PM, Valerie Obenchain wrote: Hi Robert, I will look into this next week. Thanks for providing details and examples in the request. Valerie On 02/06/2013 04:10 PM, Robert Castelo wrote: dear maintainers of the graph package, i have a small request f

Re: [Bioc-devel] small request on graph::graphBAM()

2013-02-07 Thread Valerie Obenchain
Hi Robert, I will look into this next week. Thanks for providing details and examples in the request. Valerie On 02/06/2013 04:10 PM, Robert Castelo wrote: dear maintainers of the graph package, i have a small request for the constructor function graphBAM() from the graph package. the curr

[Bioc-devel] small request on graph::graphBAM()

2013-02-06 Thread Robert Castelo
dear maintainers of the graph package, i have a small request for the constructor function graphBAM() from the graph package. the current help page of the graphBAM() constructor says the following about the argument called 'nodes': A character vector of node labels. Use this to add degree z