Over the next few days, we will be transitioning the single package builder for
new Bioconductor submissions to use Bioconductor 3.22 rather than 3.21
following the latest Bioconductor release on April 16. This may result in
downtime to the build on demand functionality. We appreciate your
un
Over the next few days we will be moving the builder for new Bioconductor
submissions to use Bioc 3.21. During that time the on-demand build feature may
be intermittently unavailable. We appreciate your understanding.
Also of note: for those of you with packages with "awaiting moderation" . W
We'll be updating the builder for the new package on-demand builds, so the
submission queue will not be available. We apologize for the inconvenience and
appreciate your understanding.
Jennifer Wokaty (they/them)
Waldron Lab at CUNY SPH
Bioconductor Core Team
[[alternative HTML ver
9, 2024 11:27 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder for New Package Submission
* This email originates from a sender outside of CUNY. Verify the sender before
replying or clicking on links and attachments. *
We will be updating the builders that the new
We will be updating the builders that the new package submission on-demand
builds use. During this time on-demand building of packages in the submission
queue will be unavailable. We apologize for any inconvenience and appreciate
your understanding.
Lori Shepherd - Kern
Bioconductor Cor
Over the next few days, we will be transitioning the single package builder for
new Bioconductor submissions to use Bioconductor 3.20 rather than 3.19
following the latest Bioconductor release on May 1. This may result in
downtime to the build on demand functionality. We appreciate your
under
ry 7, 2024 7:17 AM
To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>
<mailto:bioc-devel@r-project.org>
Subject: [Bioc-devel] Single Package Builder failing to detect
subscription to the Bioc-devel mailing list
Hi all,
My package submission is repeatedly failing due to an erro
; Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Boyi Guo
Sent: Wednesday, January 10, 2024 2:53 PM
To: Kern, Lori
Cc: Richard Heery ; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Single Package Builder failing to detect subscription
> From: Bioc-devel on behalf of Richard
> Heery
> Sent: Sunday, January 7, 2024 7:17 AM
> To: bioc-devel@r-project.org
> Subject: [Bioc-devel] Single Package Builder failing to detect
> subscription to the Bioc-devel mailing list
>
> Hi all,
>
> My
Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Richard Heery
Sent: Sunday, January 7, 2024 7:17 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder failing t
Hi all,
My package submission is repeatedly failing due to an error saying I am not
subscribed to the Bioc-devel mailing list, even though I am subscribed
using this email. This is the same email I have in the DESCRIPTION file and
also as my git user.email both globally and locally in the reposito
We will be updating the single package builder for new package submissions to
run on the devel version of Bioconductor (3.19) and R (4.4). During the update
period there may be periods of intermittent downtime where build on demand is
unavailable. We appreciate your understanding during this t
We will be performing maintenance on the single package builder for new
submissions today. There may be short intervals where the on-demand/build on
version bump capabilities will not be accessible. We appreciate your
understanding.
Cheers,
Lori Shepherd - Kern
Bioconductor Core Team
Rosw
There has been an issue identified that BiocCheck is currently broken. We are
investigating and will have it resolved soon. Until it is resolved it will
cause all packages to have an ERROR on the build report for new package
submission.
Cheers,
Lori Shepherd - Kern
Bioconductor Core Team
We will be updating the builder used for single package submission to our devel
builders. There may be periods of time the build on demand feature for new
package submissions is unavailable. We appreciate your understanding.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehen
___
From: Bioc-devel on behalf of Kern, Lori
Sent: Monday, March 20, 2023 2:00 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder package dependency issue
We recently updated R on the devel builders. Some of the recent updates have
temporarily caused issues with finding
We recently updated R on the devel builders. Some of the recent updates have
temporarily caused issues with finding package dependencies on the Single
Package Builder for new submission. We are aware of the issue and are working
on a fix. We are sorry for the inconvenience and will have it reme
We will be doing some testing on the single package builder for new submissions.
Autogeneration of build reports on version bumps may be temporarily
unavailable.
We hope to have minimal distruption.
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Departm
d
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Kern, Lori
Sent: Monday, November 29, 2021 7:26 AM
To: bioc-devel
We will be making updates to the Single Package Builder for New Package
Submissions throughout the morning. This will cause some intermittent downtime
on the build on commit feature of new submission review process. We
appreciate your patience while we update.
Lori Shepherd
Bioconductor Co
We are currently seeing an ERROR on the Single Package Builder for new package
submission for all packages. It will appear something like the following:
Error in read.dcf(desc, fields = "Package") : cannot open the connection
Calls: BiocCheck -> .get_package_name -> read.dcf
Execution halted
Th
We are making some updates to the single package builder. While builds should
not be affects, email notifications of events may be hindered. The update
should be complete within the next 30 minutes.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Depa
Bioconductor Community,
We will be switching the single package builder for new package submissions to
build off the devel Bioc 3.13 builders shortly. During this time the single
package builder will have intermittent connectivity and you will not receive
automatic build reports on version bum
om: Bioc-devel on behalf of Kern, Lori
Sent: Thursday, October 8, 2020 8:51 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder for New Package Submission
We are encountering ERRORs with the Single Package Builder used for new package
submission. Currently, build reports
We are encountering ERRORs with the Single Package Builder used for new package
submission. Currently, build reports are not being produced on git push. We
are aware of the issue and are working to have it resolved as soon as possible.
We apologize for any inconvenience and will kick off manu
evel on behalf of Shepherd, Lori
Sent: Wednesday, September 9, 2020 12:40 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder Updates
There have been some bugs reported for the MacOS Single Package Builder. We
will begin running some tests and updates shortly which may r
There have been some bugs reported for the MacOS Single Package Builder. We
will begin running some tests and updates shortly which may result in some
downtime or unexpected ERROR's when trying to trigger build reports. We
appreciate your understanding and hope to have the issue resolved shortl
Hello,
We will be performing some updates on the single package builder for new
submissions today June 30. There will be a period of downtime while we run the
updates. During this time packages on the tracker will not receive automatic
builds. We apologize for any inconvenience and appreciat
Hello all,
We will be updating the Single Package Builder to run on the devel version of
Bioconductor 3.12 over the new few days. During the update the Single Package
Builder may experience intermittent down time. We apologize for any
inconvenience this may cause and hope to keep downtime to a
Hello all,
We will be updating the Single Package Builder to build on Bioc 3.11 and R 4.0
later today and tomorrow. You can expect some downtown and some periods of
intermittent activity. We appreciate your patience while we make the
transition.
Thank you.
Lori Shepherd
Bioconductor Core
rk 14263
From: Bioc-devel on behalf of Shepherd, Lori
Sent: Tuesday, May 21, 2019 7:27:39 AM
To: bioc-devel
Subject: [Bioc-devel] Single Package Builder Updates
Hello maintainers,
Now that the devel builds have been stable for a few weeks we will transition
th
Hello maintainers,
Now that the devel builds have been stable for a few weeks we will transition
the single package builder to also be building off Bioc 3.10. The transition
will begin this morning and hopefully only last a few hours. During this period
the Single Package Builder will be off
rk 14263
From: Bioc-devel on behalf of Shepherd, Lori
Sent: Monday, May 6, 2019 10:03:24 AM
To: bioc-devel
Subject: [Bioc-devel] Single Package Builder for New Submissions
We are experiencing some issues with the Single Package Builder relating to the
release. Currentl
We are experiencing some issues with the Single Package Builder relating to the
release. Currently builds may not be executing with versions bumps or you may
get a report with a
Fatal error: cannot create 'R_TempDir'
We are working on a solution and hope to have it running as normal soon.
Th
rk 14263
From: Bioc-devel on behalf of Martin Morgan
Sent: Monday, February 18, 2019 12:30:37 PM
To: Felix Ernst; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Single Package Builder
Issues with the SPB may persist until Tuesday morning. Martin
On 2/18/19, 5:29 AM, "Bioc-devel on be
Issues with the SPB may persist until Tuesday morning. Martin
On 2/18/19, 5:29 AM, "Bioc-devel on behalf of Felix Ernst"
wrote:
Hi,
I just wanted to ask, whether the SPB is under maintenance.
After a push, the bot reports the start of a build, but th
Hi,
I just wanted to ask, whether the SPB is under maintenance.
After a push, the bot reports the start of a build, but the build is not
started or at least the result is not reported back to the issue on GitHub.
I hope I didn�t miss something or is the info from the 29th of January sti
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Ludwig
Geistlinger
Sent: Monday, January 28, 2019 7:53:05 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder for New Submissions
Dear Lori,
Is the update of
esn't seem to have an internet connection?
Thank you,
Ludwig
--
Dr. Ludwig Geistlinger
CUNY School of Public Health
From: Bioc-devel on behalf of Shepherd, Lori
Sent: Tuesday, January 22, 2019 9:26 AM
To: bioc-devel@r-project.org
Subject: [Bioc-de
During this week we will be updating the Single Package Builder to use a new
MAC builder. During this updating and testing, the Single Package Builder may
produce some sporadic ERRORs or experience intermittent periods of downtime.
We will be as quick as possible and hope to keep the interru
Hello all,
We will be working on converting the Single Package builder over to R 3.6 Bioc
3.9.
During this time you may experience service downtime for the issue tracker and
automatic builds during the submission review process. We hope the
inconvenience will be minimal and thank you for you
We will be updating the Single Package Builder for new package submissions this
morning. While the updates are occurring there will be a temporary downtime
for submitting new packages and receiving the automatically generated build
reports for existing submissions. We will announce when it is
of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Shepherd, Lori
Sent: Saturday, March 3, 2018 8:44:58 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Single Package Builder temporar
There have been some updates to the builders and will require some additional
updates to the single package builder. While this is occurring the single
package builder for new package submissions will temporarily be down. We will
notify when the updates are complete and the single package buil
oc-devel on behalf of Shepherd, Lori
Sent: Monday, December 11, 2017 9:14:41 AM
To: Martin Morgan
Subject: [Bioc-devel] Single Package Builder Updates and Testing
The Single Package Builder will be undergoing some updating and testing over
the next few days. While it will still be active and ge
The Single Package Builder will be undergoing some updating and testing over
the next few days. While it will still be active and generating reports, there
may be intermittent periods of inactivity. We hope this will be to a minimum
and will notify when testing is complete.
Lori Shepherd
Bi
n Morgan
Subject: [Bioc-devel] Single Package Builder / Package Submission
We will begin to update the single package builders used to build and check new
package submission to R 3.5 Bioc 3.7 today. While this is occurring the single
package builder will be off line and there will be no builds f
We will begin to update the single package builders used to build and check new
package submission to R 3.5 Bioc 3.7 today. While this is occurring the single
package builder will be off line and there will be no builds for newly
submitted packages.
Thank you for your patience and understandi
Over the next week, we will be transitioning the Single Package Builder to the
latest versions of R and Bioc 3.6. The single package builder is used when new
packages are submitted to: https://github.com/Bioconductor/Contributions .
Please be advised that there may be intermittent periods whe
n behalf of Shepherd, Lori
Sent: Monday, February 27, 2017 9:14:45 AM
To: Martin Morgan
Subject: [Bioc-devel] Single Package Builder
The Single Package Builder is currently offline. We are working on restoring
and will update when it is back online.
Lori Shepherd
Bioconductor Core Team
Rosw
The Single Package Builder is currently offline. We are working on restoring
and will update when it is back online.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
This email me
Hello
We will be attempting to update the single package builder to bioc 3.5 with R
3.4 over the next few days. Please note that there may be some disruption and
the builders may not be available for packages that make updates during this
time. We hope this transition will go quickly and smo
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