Re: [Bioc-devel] rtracklayer: Export to bigwig with unused seqlevels

Hi Michael, Thanks, works all fine now. Best wishes Julian On 28/03/14 22:05, Michael Lawrence wrote: > Thanks, should be resolved in 1.23.20 (devel). > > > On Fri, Mar 28, 2014 at 8:09 AM, Julian Gehring > wrote: > > Hi, > > Exporting a GRanges objec

Re: [Bioc-devel] rtracklayer: Export to bigwig with unused seqlevels

Thanks, should be resolved in 1.23.20 (devel). On Fri, Mar 28, 2014 at 8:09 AM, Julian Gehring wrote: > Hi, > > Exporting a GRanges object to the 'bigwig' format with rtracklayer fails > if not all seqlevels are used: > > #+BEGIN_SRC R > library(rtracklayer) > library(GenomicRanges) > > ##

[Bioc-devel] rtracklayer: Export to bigwig with unused seqlevels

Hi, Exporting a GRanges object to the 'bigwig' format with rtracklayer fails if not all seqlevels are used: #+BEGIN_SRC R library(rtracklayer) library(GenomicRanges) ## example data example(GRanges) lg = reduce(unstrand(longGR)) lg$score = 1:6 ## full one works export(lg, tempfi