Re: [Bioc-devel] rtracklayer: BigWigFIle on Windows

2015-09-17 Thread Michael Lawrence
I've never tested it, and reports up until now have been negative. It would help to know the error message (if any) and characteristics of the systems that work or don't work. Given that it works in some circumstances, it sounds like we could make it work more reliably. Michael On Thu, Sep 17, 20

Re: [Bioc-devel] rtracklayer: BigWigFIle on Windows

2015-09-17 Thread Kasper Daniel Hansen
Thanks. While fetching data over the internet is pretty nice, for me there is a big difference between being able to read local BigWig files and not being able to read anything at all. Wrt. your answer I am a bit unclear whether you expect it to work on a machine local file on Windows. Best, Kas

Re: [Bioc-devel] rtracklayer: BigWigFIle on Windows

2015-09-17 Thread Michael Lawrence
I would say that it's unsupported, and surprising that it actually worked for you. It would require some non-trivial engineering to get it fully working on Windows. For example, to access data via HTTP, one would need to implement or integrate an HTTP client based on Windows sockets, as well as abs

[Bioc-devel] rtracklayer: BigWigFIle on Windows

2015-09-17 Thread Kasper Daniel Hansen
In the man page for trackLayer::BigWigFile it says "These functions do not work on Windows". Despite this statement, which seems to have been around for a while, I and several of my students seems to be able to execute something like import(bwFile, which = my.gr, as = "Rle") on Windows on a BigW