Re: [Bioc-devel] rGADEM crash

2013-03-27 Thread Gustavo Fernández Bayón
Hi Robert. This is what makes these lists worth it. People like you. Thank you very much for the effort you have taken writing this tutorial. Of course I am putting it into practice right now. Problem is, rGADEM looks like a big monster to me. ;) Regards, Gus On 26/03/13 16:51, Robert Cast

Re: [Bioc-devel] rGADEM crash

2013-03-26 Thread Robert Castelo
hi Gustavo, just in case it helps, here is a one-minute crash course on valgrind. a way that helped me in the past to learn interpreting valgrind output was to make a toy example with memory leaks and then see how valgrind was detecting them. code the following C program under the name memleak

[Bioc-devel] rGADEM crash

2013-03-26 Thread Gustavo Fernández Bayón
Hi everybody. I am experiencing problems with rGADEM. Say I have the following script, which I have written trying to replicate the error: library(FDb.InfiniumMethylation.hg19) library(BSgenome.Hsapiens.UCSC.hg19) library(rGADEM) annot <- get450k() rois <- keepSeqlevels(annot[1:10], paste0('ch