Re: [Bioc-devel] project templating tools

2018-01-22 Thread Michael Lawrence
I have always just advocated using R packages as a means to organize analyses, with an "analysis" subdirectory serving as a sort of scratch space. The DESCRIPTION serves as a readme, there are places for reusable functions (/R), data (/data), reports (/vignettes), etc. Several groups here follow th

Re: [Bioc-devel] project templating tools

2018-01-21 Thread Nima Hejazi
Hello --- I have quite a bit of experience with using the ProjectTemplate package, as I rely on it for most of my applied work in R -- that is, nearly everything not related to package development (e.g., applied data analysis for collaborators, simulation studies, etc.). I've found that it provide

[Bioc-devel] project templating tools

2018-01-21 Thread Vincent Carey
Does anyone have experience with http://projecttemplate.net/index.html ? I am wondering if there may be a fruitful connection to approaches to workflow construction/authoring practices. [[alternative HTML version deleted]] ___ Bioc-devel@r-pr