Re: [Bioc-devel] odd vignette dependency issue

2014-10-06 Thread Martin Morgan
On 10/06/2014 10:29 AM, Daniel Schmolze wrote: Thanks Martin, that makes sense. I think your suggestion may be my only option. I hope by 'my suggestion' you mean contacting the survcomp maintainer(s) (I have bcc'd them on this email) and letting them know! Martin On Mon, Oct 6, 2014 at 1:

Re: [Bioc-devel] odd vignette dependency issue

2014-10-06 Thread Martin Morgan
On 10/06/2014 07:52 AM, Daniel Schmolze wrote: I'm getting a vignette error from the BioC build servers that I can't reproduce locally: * creating vignettes ... ERROR Quitting from lines 116-119 (saps.Rmd) Error: processing vignette 'saps.Rmd' failed with diagnostics: could not find function "su

Re: [Bioc-devel] odd vignette dependency issue

2014-10-06 Thread Dan Tenenbaum
- Original Message - > From: "Daniel Schmolze" > To: bioc-devel@r-project.org > Sent: Monday, October 6, 2014 7:52:49 AM > Subject: [Bioc-devel] odd vignette dependency issue > > I'm getting a vignette error from the BioC build servers that I can&#x

[Bioc-devel] odd vignette dependency issue

2014-10-06 Thread Daniel Schmolze
I'm getting a vignette error from the BioC build servers that I can't reproduce locally: * creating vignettes ... ERROR Quitting from lines 116-119 (saps.Rmd) Error: processing vignette 'saps.Rmd' failed with diagnostics: could not find function "survfit" The offending lines in saps.Rmd call a fu