Awesome. Thanks for all your help!
Thomas
On Fri, Mar 19, 2021 at 2:42 PM Hervé Pagès
wrote:
> Hi Thomas, Kevin,
>
> Looks like ChemmineOB 1.28.2 is finally green on malbec1 and is now
> available in BioC 3.12 via BiocManager::install():
>
>https://bioconductor.org/checkResults/3.12/bioc-LA
Hi Thomas, Kevin,
Looks like ChemmineOB 1.28.2 is finally green on malbec1 and is now
available in BioC 3.12 via BiocManager::install():
https://bioconductor.org/checkResults/3.12/bioc-LATEST/ChemmineOB/
Cheers,
H.
On 3/17/21 10:23 AM, Thomas Girke wrote:
Awesome, thanks!
On Tue, Mar 16
Awesome, thanks!
On Tue, Mar 16, 2021 at 11:40 PM Hervé Pagès
wrote:
> Hi Thomas, Kevin,
>
> openbabel3 is now on malbec1 (Ubuntu 18.04). Kevin's
> ubuntu_18.04_openbabel3_debs.tar.gz worked like a charm. Thanks for
> making it so easy.
>
> Note that this addition will affect ChemmineOB build/ch
Hi Thomas, Kevin,
openbabel3 is now on malbec1 (Ubuntu 18.04). Kevin's
ubuntu_18.04_openbabel3_debs.tar.gz worked like a charm. Thanks for
making it so easy.
Note that this addition will affect ChemmineOB build/check results on
malbec1 on Thursday only:
https://bioconductor.org/checkResul
@Kevin: Thanks for providing openbabel3 for Ubuntu 18.04. Will take a
look ASAP.
@Thomas: Yes, the Ubuntu 18.04 builds are only used for the BioC 3.12
builds (release). BioC 3.13 and further BioC releases are/will be using
Ubuntu >= 20.04.
Best,
H.
On 3/15/21 1:59 PM, Thomas Girke wrote:
Thanks Hervé for your help with this.
Kevin has provided the *.deb package for installing OpenBabel 3.x on Ubuntu
18.04. Just in case, below is how we usually install OpenBabel 3.x.x across
different Ubuntu/Debian systems.
BTW: is it correct to assume that the Ubuntu 18.04 builds will be
disconti
Herve,
I've backported openbabel3 from 20.04 to 18.04. You can download a
tarball with all the deb files in here:
http://cluster.hpcc.ucr.edu/~khoran/ubuntu_18.04_openbabel3_debs.tar.gz
Kevin
On 3/15/21 10:10 AM, Hervé Pagès wrote:
Hi Thomas, Kevin,
We still need to install the system
Hi Thomas, Kevin,
We still need to install the system deps on the devel Windows builders
(riesling1 and tokay2). We'll do it this week. Thanks for the reminder
and for making the OpenBabel-3.0.0 Windows Binaries available on your
GitHub repo.
Note that OpenBabel 3 is installed on machv2 (dev
Dear Hervé and Martin,
It seems the above problem on the Windows builds has been resolved for some
time now. However, any updates on Linux in the release branch are not
taking effect since some/all of the Openbabel dependencies are not
available on the corresponding Linux build system (here Ubuntu
It's likely failing because your package has C source code that accesses memory
in an invalid way. Likely the bug is present on all platforms, but only
apparent, for the tests you have written, on Windows. The right thing to do is
to fix the bug, rather than avoid by not running on the troubleso
I have a package which randomly segfaults when running my unit
tests only on windows i386, but never on x64, or any other OS. I can't
imagine there are many out there still running i386 systems are there?
Is it possible to just disable the i386 build on bioconductor so that
the tests are
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