Re: [Bioc-devel] incomplete vignette on macosx

2016-10-27 Thread Renan Valieris
Hi Hervé, >names(dev.cur()) should be "null device" in the context of vignette generation really ? this is intriguing because on the machine I tested it is "png" instead. perhaps this is the problem ? I'm going to try to set knitr device as png: opts_chunk$set(dev = 'png') on the devel build to

Re: [Bioc-devel] incomplete vignette on macosx

2016-10-26 Thread Hervé Pagès
Hi Renan, I'm not familiar with Rhtml vignettes and I couldn't get to the bottom of this but it seems to me that the calls to dev.new() in your plotting functions somehow get in the way and confuse the knit engine. If I remove them the problem goes away i.e. the images get generated and embedded

[Bioc-devel] incomplete vignette on macosx

2016-10-25 Thread Renan Valieris
Hello, I noticed the vignette of the macosx build of my package[1] is incomplete, the generated images were not included in the html. The windows, linux and the online vignette was generated properly. I built the package locally on my macosx without any errors and the vignette is generated