Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Michael Lawrence
>> import(S4Vectors, except=c(fold, values)) >>>>> import(IRanges, except=values) >>>> >>>> >>>> Unrelated note: should be no need to exclude values from IRanges. It >>>> is S4Vectors that exports the generic. >>>>

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Hervé Pagès
t quoted? Dan - Original Message - From: "Karim Mezhoud" To: "Dan Tenenbaum" Cc: "Lihua Zhu" , "Michael Lawrence" , "bioc-devel" Sent: Monday, April 11, 2016 10:21:42 AM Subject: Re: [Bioc-devel] import except on Window Machine

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
t;Unrelated note: should be no need to exclude values from IRanges. It >>>is S4Vectors that exports the generic. >>> >>>> >>>> So maybe make sure the objects to be excepted are not quoted? >>>> >>>> Dan >>>> >>>&g

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Michael Lawrence
for file Œ/Volumes/DATA/radiant/bioCancer/DESCRIPTION¹ ... >>>>OK >>>> * preparing ŒbioCancer¹: >>>> * checking DESCRIPTION meta-information ... OK >>>> * checking for LF line-endings in source and make files >>>> * check

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
to be excepted are not quoted? >> >> Dan >> >> >> >> - Original Message - >>> From: "Karim Mezhoud" >>> To: "Dan Tenenbaum" >>> Cc: "Lihua Zhu" , "Michael Lawrence" >>

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Michael Lawrence
generic. > > So maybe make sure the objects to be excepted are not quoted? > > Dan > > > > - Original Message - >> From: "Karim Mezhoud" >> To: "Dan Tenenbaum" >> Cc: "Lihua Zhu" , "Michael Lawrence&quo

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
"Michael Lawrence" > , "bioc-devel" > > Sent: Monday, April 11, 2016 10:21:42 AM > Subject: Re: [Bioc-devel] import except on Window Machine > # ##BUILT & RELOAD > ==> R CMD INSTALL --no-multiarch --with-keep.source bioCancer > > * in

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Karim Mezhoud
im Mezhoud" > > To: "Dan Tenenbaum" > > Cc: "Lihua Zhu" , "Michael Lawrence" < > lawrence.mich...@gene.com>, "bioc-devel" > > > > Sent: Monday, April 11, 2016 10:08:15 AM > > Subject: Re: [Bioc-devel] import exc

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
ihua Zhu" mailto:julie@umassmed.edu>> >> To: "bioc-devel" mailto:bioc-devel@r-project.org>> >> Cc: "Michael Lawrence" >> mailto:lawrence.mich...@gene.com>> >> Sent: Monday, April 11, 2016 9:18:31 AM >> Subject: [Bioc-devel] import

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
bioc-devel" > > Sent: Monday, April 11, 2016 10:08:15 AM > Subject: Re: [Bioc-devel] import except on Window Machine >> sessionInfo() > R version 3.3.0 beta (2016-04-06 r70435) > Platform: x86_64-apple-darwin13.4.0 (64-bit) > Running under: OS X 10.11.3 (El Capitan) >

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Karim Mezhoud
m" , "Michael Lawrence" < > lawrence.mich...@gene.com>, "bioc-devel" > > > > Sent: Monday, April 11, 2016 10:03:52 AM > > Subject: Re: [Bioc-devel] import except on Window Machine > > > Dear Julie, > > Are you using roxigen2 to

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
awrence" > , "bioc-devel" > > Sent: Monday, April 11, 2016 10:03:52 AM > Subject: Re: [Bioc-devel] import except on Window Machine > Dear Julie, > Are you using roxigen2 to edit NAMESPACE file? > Are you using R 3.4? > Thanks > > In my case, When I

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Karim Mezhoud
ill running an older version of R that does not > >support this NAMESPACE syntax. I will update it this week. > >Dan > > > > > >- Original Message - > >> From: "Lihua Zhu" > >> To: "bioc-devel" > >> Cc:

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
;Lihua Zhu" >> To: "bioc-devel" >> Cc: "Michael Lawrence" >> Sent: Monday, April 11, 2016 9:18:31 AM >> Subject: [Bioc-devel] import except on Window Machine > >> Michael, >> >> For some reason, adding except clause i

Re: [Bioc-devel] import except on Window Machine

2016-04-11 Thread Dan Tenenbaum
April 11, 2016 9:18:31 AM > Subject: [Bioc-devel] import except on Window Machine > Michael, > > For some reason, adding except clause in import in the NAMESPACE file gives > error on window server, although it runs fine on Linux and Mac OS X. > http://bioconductor.org/checkResults/d

[Bioc-devel] import except on Window Machine

2016-04-11 Thread Zhu, Lihua (Julie)
Michael, For some reason, adding except clause in import in the NAMESPACE file gives error on window server, although it runs fine on Linux and Mac OS X. http://bioconductor.org/checkResults/devel/bioc-LATEST/CRISPRseek/moscato2-buildsrc.html Here is the line that gives error. import(S4Vectors,