Re: [Bioc-devel] git push confusion

2018-04-24 Thread Karl Stamm
Wonderful, thank you. It appears to be fixed now. On Mon, Apr 23, 2018 at 8:25 PM, Hervé Pagès wrote: > Hi Karl, > > We don't have an easy way to know when exactly you pushed your changes > to git.bioconductor.org but it seems that you did it only today so you > need to wait about 24h to see thi

Re: [Bioc-devel] git push confusion

2018-04-23 Thread Hervé Pagès
Hi Karl, We don't have an easy way to know when exactly you pushed your changes to git.bioconductor.org but it seems that you did it only today so you need to wait about 24h to see this reflected on the build report. H. On 04/23/2018 09:26 AM, Turaga, Nitesh wrote: You can check which version

Re: [Bioc-devel] git push confusion

2018-04-23 Thread Turaga, Nitesh
You can check which version is being used by going to this link http://bioconductor.org/checkResults/devel/bioc-LATEST/rgsepd/malbec2-buildsrc.html It seems that your package is using the commit from Oct 30th. We’ll take a look at this, it seems to be an issue with the build system. Your Biocond

Re: [Bioc-devel] git push confusion

2018-04-23 Thread Turaga, Nitesh
Please check out the documentation http://bioconductor.org/developers/how-to/git/push-to-github-bioc/ > On Apr 23, 2018, at 12:13 PM, Karl Stamm wrote: > > How do I "push to both"? I dont understand the numerous git terminology. On > Friday I tried to push the bugfix but the build server still

Re: [Bioc-devel] git push confusion

2018-04-23 Thread Karl Stamm
I did all that. git push upstream master says "everything up to date" and step 7 says confirm the changes by browsing Github. Github.org has had the changes since Friday but the build servers did not have the changes when the build was attempted on Sunday. Are they on a branch other than "master"?

Re: [Bioc-devel] git push confusion

2018-04-23 Thread Karl Stamm
How do I "push to both"? I dont understand the numerous git terminology. On Friday I tried to push the bugfix but the build server still errors. git log commit 17c35588bcb6d87a9520cfad6d7d52fa209c517f (HEAD -> master, upstream/master, origin/master, origin/HEAD) So I guess the build servers are

Re: [Bioc-devel] git push confusion

2018-04-23 Thread Turaga, Nitesh
Hi Karl, Bioconductor doesn’t automatically grab changes from your Github. A large body of the work is maintained only on our Bioconductor git server. The maintainer has to push to both Github and the Bioconductor server if the changes have to propagate. RELEASE_3_6 is now frozen forever. We

[Bioc-devel] git push confusion

2018-04-23 Thread Karl Stamm
I got a message this morning that malbec2 has build errors on my package. It's a bug I fixed a few days ago, but it looks like I didn't push changes to the right branches or something. How do I get the bioc systems to take from the github updates? The help documents on the bioconductor website say