Hi Levi,
On 09/07/2017 02:52 PM, Levi Waldron wrote:
Thanks, Nitesh! See below:
On Thu, Sep 7, 2017 at 4:21 PM, Turaga, Nitesh <
nitesh.tur...@roswellpark.org> wrote:
Hi Levi,
I’m not sure what you mean by tracked vs checked.
Sorry, I meant whether there are any differences in the way sof
Thanks, Nitesh! See below:
On Thu, Sep 7, 2017 at 4:21 PM, Turaga, Nitesh <
nitesh.tur...@roswellpark.org> wrote:
> Hi Levi,
>
> I’m not sure what you mean by tracked vs checked.
>
Sorry, I meant whether there are any differences in the way software and
experimental data packages are handled by
Hi Levi,
I’m not sure what you mean by tracked vs checked.
On another note, I have explored your package a little on GitHub
(waldronLab/curatedOvarianData), and I’ve noticed that the data files there are
stored as LFS files. As long as you don’t add the .gitattributes file in
upstream, you sho
Thank you, Nitesh. Is there any difference at all now in how experimental
data vs. software packages are tracked and checked?
On Tue, Sep 5, 2017 at 8:40 PM, Turaga, Nitesh <
nitesh.tur...@roswellpark.org> wrote:
> Hi Levi,
>
> The external_data_store.txt file is not needed anymore.
>
> The curr
Hi Levi,
The external_data_store.txt file is not needed anymore.
The current git.bioconductor.org server does not store files in the LFS mode,
so you can just add a file, commit and push. But for Github, you might have to
use LFS for such large files. I’ll look into this more and get back to yo
Also, can I now remove external_data_store.txt?
$ cat external_data_store.txt
data
inst/extdata
On Tue, Sep 5, 2017 at 4:38 PM, Levi Waldron
wrote:
> Are a couple extra commands needed at https://www.bioconductor.
> org/developers/how-to/git/maintain-github-bioc/ for experimental data
> packag
Are a couple extra commands needed at
https://www.bioconductor.org/developers/how-to/git/maintain-github-bioc/
for experimental data packages? I followed the instructions here for
curatedOvarianData, but got GitHub warnings on push:
remote: warning: GH001: Large files detected. You may want to try
