Re: [Bioc-devel] error using the DEXSeqDataSet function

2015-07-30 Thread Martin Morgan
On 07/30/2015 09:02 AM, Alejandro Reyes wrote: Dear Leonard, Thanks a lot for reporting this. It should be fixed in the version that I just committed to the svn (DEXSeq 1.5.10). While debugging the DEXSeq code, I noticed that summarizedOverlaps is giving me an error, which I think its a bug whi

Re: [Bioc-devel] error using the DEXSeqDataSet function

2015-07-30 Thread Leonard Goldstein
Dear Alejandro, DEXSeq is working fine now. Thanks very much for the quick fix. Best wishes, Leonard On Thu, Jul 30, 2015 at 9:02 AM, Alejandro Reyes wrote: > Dear Leonard, > > Thanks a lot for reporting this. It should be fixed in the version that I > just committed to the svn (DEXSeq 1.5.1

Re: [Bioc-devel] error using the DEXSeqDataSet function

2015-07-30 Thread Alejandro Reyes
Dear Leonard, Thanks a lot for reporting this. It should be fixed in the version that I just committed to the svn (DEXSeq 1.5.10). While debugging the DEXSeq code, I noticed that summarizedOverlaps is giving me an error, which I think its a bug while creating the summarizedExperiments object t

[Bioc-devel] error using the DEXSeqDataSet function

2015-07-29 Thread Leonard Goldstein
Hi all, I'm having trouble creating a DEXSeqDataSet object (in the devel version of DEXSeq) Running the example included in the manual page results in the same error I get with my own data (see below) Many thanks for your help. Leonard > library(DEXSeq) > countData <- matrix( rpois(1, 100)