Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-07-05 Thread Martin Morgan
On 07/05/2016 05:01 AM, Christian Arnold wrote: Hi, I am receiving the same error message, but under different conditions, and I don't know how to fix it. If anyone has an idea, much appreciated! Here is my setup: 1) R Under development (unstable) (2016-01-06 r69881) (3.3.0) This is from bef

Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-07-05 Thread Christian Arnold
Hi, I am receiving the same error message, but under different conditions, and I don't know how to fix it. If anyone has an idea, much appreciated! Here is my setup: 1) R Under development (unstable) (2016-01-06 r69881) (3.3.0) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.

Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-05-02 Thread Dan Tenenbaum
ssage - > From: "Jianhong Ou" > To: "Dan Tenenbaum" > Cc: "bioc-devel" > Sent: Monday, May 2, 2016 12:34:47 PM > Subject: Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5 > Hi Dan, > > Thank you for your answer. I hope I can upd

Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-05-02 Thread Ou, Jianhong
R or Bioconductor (that's why a >binary is not available). > > >Dan > > >- Original Message - >> From: "Jianhong Ou" >> To: "bioc-devel" >> Sent: Monday, May 2, 2016 12:00:09 PM >> Subject: [Bioc-devel] could not install S4

Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-05-02 Thread Ou, Jianhong
Dear Herve, After reinstalling BiocGenerics, there is no errors any more. Thank you very much. Yours Sincerely, Jianhong Ou TEL: 508-856-5379 LRB 608 Bioinformatician of Bioinformatics core at Department of Molecular, Cell and Cancer Biology 364 Plantation Street Worcester, MA 01605 On 5/2

Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-05-02 Thread Hervé Pagès
Hi Jianhong, order() got a new argument in R 3.3 and the order() generic in BiocGenerics was modified accordingly. Please try to re-install BiocGenerics before you try to update S4Vectors. In fact, when updating R, all your packages should be re-installed. Most people don't do it because that t

[Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-05-02 Thread Ou, Jianhong
Hi, I got error when I update S4Vectors in R 3.3 RC r70564 today. I also tried r70549, same error like this > biocLite() BioC_mirror: https://bioconductor.org Using Bioconductor 3.3 (BiocInstaller 1.21.6), R 3.3.0 RC (2016-04-28 r70564). Old packages: 'S4Vectors' Update all/some/none? [a/s/n]: a

Re: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5

2016-05-02 Thread Dan Tenenbaum
ssage - > From: "Jianhong Ou" > To: "bioc-devel" > Sent: Monday, May 2, 2016 12:00:09 PM > Subject: [Bioc-devel] could not install S4Vectors in Mac OS 10.8.5 > Hi, > > I got error when I update S4Vectors in R 3.3 RC r70564 today. I also tried