On 06/15/2013 07:46 AM, Steffen Durinck wrote:
Hi Martin,
I see this change leads to confusion and people having to change their code,
I've changed (biomaRt 2.17.2) the default value of bmHeader to FALSE, so column
naming will be as it used to be.
When a query fails or one is in doubt of the col
On 06/07/2013 09:39 PM, Steffen Durinck wrote:
Hi Martin,
The original behaviour is offered through bmHeader = FALSE in the getBM query.
Below is the long story why this change came about (it would be good to hear
which solution is preferred by others):
Hi Steffen -- thanks for the response. I
Hi Steffen --
getBM now returns the 'description' rather than 'name' of biomaRt columns, e.g.,
mart <- useMart("ensembl")
datasets <- listDatasets(mart)
mart<-useDataset("hsapiens_gene_ensembl",mart)
df <- getBM(attributes=c("affy_hg_u95av2", "hgnc_symbol",
