Re: [Bioc-devel] Whether to copy unexported BSgenome function into multicrispr

2019-08-28 Thread Pages, Herve
Hi Aditya, I've added the 'load.only' argument to getBSgenome(). This is in BSgenome 1.53.2. See https://github.com/Bioconductor/BSgenome/commit/0eeddb5c0f57c69a0db31874b7b031ba06720bee This change will propagate to BioC devel in the next couple of days. Cheers, H. On 8/28/19 02:18, Bhagwat,

[Bioc-devel] Whether to copy unexported BSgenome function into multicrispr

2019-08-28 Thread Bhagwat, Aditya
Dear BioC developers, BSgenome::getBSgenome('mm10') returns BSgenome.Mmusculus.UCSC.mm10::Mmusculus. But that function also attaches BiocGenerics, S4Vectors, IRanges and Biostrings, which is unfortunate from a keep-the-namespace-clean perspective. I could instead use the clean alternative bsnam