Now in IRanges 2.0.1 and VariantAnnotation 1.12.7.
Valerie
On 12/11/2014 09:32 AM, Julian Gehring wrote:
Can you backport the fixes to bioc-release which is also affected?
Best
Julian
Valerie Obenchain (12/09/14 03:24):
Thanks to Michael and Julian for taking care of this. Fixes are in
de
Can you backport the fixes to bioc-release which is also affected?
Best
Julian
Valerie Obenchain (12/09/14 03:24):
> Thanks to Michael and Julian for taking care of this. Fixes are in
> devel, >= 1.13.15.
>
> Valerie
>
>
> On 12/03/14 08:44, Michael Lawrence wrote:
>> Looks like an issue when
Thanks to Michael and Julian for taking care of this. Fixes are in
devel, >= 1.13.15.
Valerie
On 12/03/14 08:44, Michael Lawrence wrote:
Looks like an issue when expand()ing the VCF. Maybe Val could take a look?
On Wed, Dec 3, 2014 at 7:39 AM, Julian Gehring
wrote:
Hi,
The conversion fro
Looks like an issue when expand()ing the VCF. Maybe Val could take a look?
On Wed, Dec 3, 2014 at 7:39 AM, Julian Gehring
wrote:
> Hi,
>
> The conversion from a 'VCF' to 'VRanges' object fails if an INFO field
> with multiple values for different ALT alleles is present:
>
> Here an example VCF e
Hi,
The conversion from a 'VCF' to 'VRanges' object fails if an INFO field
with multiple values for different ALT alleles is present:
Here an example VCF entry for which this fails (line 71151250 in
'ALL.wgs.phase3_shapeit2_mvncall_integrated_v5.20130502.sites.vcf.gz'
, taken from
ftp://ftp.1000g
