- Original Message -
> From: "Peter Hickey"
> To: "Michael Lawrence"
> Cc: bioc-devel@r-project.org
> Sent: Tuesday, September 2, 2014 7:24:12 PM
> Subject: Re: [Bioc-devel] Valid classes for extraColumnSlots
>
> Hi Michael,
>
> Sorr
t I meant is that originally
> > > the internalPos slot was a matrix (or NULL). I switched to DataFrame
> > > (or NULL) because I was running into some problems related to replaceROWS
> > > when it was a matrix.
> > >
> > > Thanks,
> > > P
NULL). I switched to DataFrame
> > > (or NULL) because I was running into some problems related to
> replaceROWS
> > > when it was a matrix.
> > >
> > > Thanks,
> > > Pete
> > >
> > > - Original Message -
> > > From: M
(or NULL) because I was running into some problems related to replaceROWS
> > when it was a matrix.
> >
> > Thanks,
> > Pete
> >
> > - Original Message -
> > From: Michael Lawrence
> > To: Peter Hickey
> > Cc: bioc-devel@r-project.org
&
s that originally
> > the internalPos slot was a matrix (or NULL). I switched to DataFrame
> > (or NULL) because I was running into some problems related to replaceROWS
> > when it was a matrix.
> >
> > Thanks,
> > Pete
> >
> > ----- Original Message -
>
t; To: Peter Hickey
> Cc: bioc-devel@r-project.org
> Sent: Tue, 26 Aug 2014 13:35:35 +1000 (EST)
> Subject: Re: [Bioc-devel] Valid classes for extraColumnSlots
> Hi Peter,
> Some code would help here. I'm not sure what you mean by having a matrix as
> your extraColumnSlots. A deriv
gt; From: Michael Lawrence
> To: Peter Hickey
> Cc: bioc-devel@r-project.org
> Sent: Tue, 26 Aug 2014 13:35:35 +1000 (EST)
> Subject: Re: [Bioc-devel] Valid classes for extraColumnSlots
> Hi Peter,
> Some code would help here. I'm not sure what you mean by having a matri
ix.
Thanks,Pete
- Original Message -From: Michael Lawrence
To: Peter Hickey Cc:
bioc-devel@r-project.orgSent: Tue, 26 Aug 2014 13:35:35 +1000 (EST)Subject: Re:
[Bioc-devel] Valid classes for extraColumnSlots
Hi Peter,
Some code would help here. I'm not sure what you mean by havi
Hi Peter,
Some code would help here. I'm not sure what you mean by having a matrix
as your extraColumnSlots. A derivative of GenomicRanges should definel a
method for extraColumnSlotNames that returns a character vector of names
for actual slots that the class defines. It sounds like you're tryin
Are the extraColumnSlots of a class that extends GenomicRanges limited to
DataFrame objects?
Background: I wrote a class that extends the GRanges class. It has a matrix as
the extraColumnSlots. When I use replaceROWS,GenomicRanges,GenomicRanges-method
(via inheritance) it extracts this extraCol
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