Re: [Bioc-devel] VRanges with multiple samples

2015-01-29 Thread Robert Castelo
hi Michael, thanks for sharing your opinion, comments below, On 01/28/2015 06:22 PM, Michael Lawrence wrote: [...] Is your concern here scalability, ease of use, or what? If scalability, we should probably start thinking about a more efficient representation for repeated vectors, kind of like R

Re: [Bioc-devel] VRanges with multiple samples

2015-01-28 Thread Michael Lawrence
On Wed, Jan 28, 2015 at 8:47 AM, Robert Castelo wrote: > hi, > > currently, the VariantFiltering package works with GRanges objects > obtained from locateVariants() and predictCoding() to hold annotated > variants and add further annotations. However, I'd like to use 'VRanges' > objects which are

[Bioc-devel] VRanges with multiple samples

2015-01-28 Thread Robert Castelo
hi, currently, the VariantFiltering package works with GRanges objects obtained from locateVariants() and predictCoding() to hold annotated variants and add further annotations. However, I'd like to use 'VRanges' objects which are, as far as i understand them, developed for exactly the purpos